Wall clock time and date at job start Mon Mar 30 2020 02:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00337 * 2 1 4 4 H 1.48499 * 109.47060 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46581 * 299.99490 * 3 2 1 6 6 H 1.48492 * 109.47381 * 59.99426 * 3 2 1 7 7 C 1.37882 * 119.99603 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99530 * 173.17131 * 7 2 1 9 9 C 1.50694 * 120.00271 * 353.18067 * 7 2 1 10 10 H 1.09003 * 109.46814 * 334.44871 * 9 7 2 11 11 C 1.52999 * 109.47612 * 94.45398 * 9 7 2 12 12 F 1.39906 * 109.46902 * 294.77301 * 11 9 7 13 13 C 1.53004 * 109.47220 * 214.45511 * 9 7 2 14 14 C 1.54260 * 110.03296 * 177.16102 * 13 9 7 15 15 C 1.54887 * 104.19601 * 217.10133 * 14 13 9 16 16 C 1.54889 * 102.74834 * 37.94804 * 15 14 13 17 17 C 1.53881 * 110.03205 * 59.99595 * 13 9 7 18 18 H 0.96999 * 120.00194 * 184.64065 * 1 2 3 19 19 H 1.08998 * 109.47150 * 54.77550 * 11 9 7 20 20 H 1.08996 * 109.47133 * 174.77943 * 11 9 7 21 21 H 1.09001 * 110.01336 * 298.60893 * 13 9 7 22 22 H 1.08997 * 110.49088 * 335.78484 * 14 13 9 23 23 H 1.09000 * 110.48492 * 98.42706 * 14 13 9 24 24 H 1.09001 * 110.76078 * 279.62870 * 15 14 13 25 25 H 1.09002 * 110.91608 * 156.33078 * 15 14 13 26 26 H 1.08998 * 110.48972 * 203.38112 * 16 15 14 27 27 H 1.09001 * 110.59950 * 80.78811 * 16 15 14 28 28 H 1.08995 * 110.03057 * 238.57254 * 17 13 9 29 29 H 1.08998 * 110.02859 * 0.02562 * 17 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0788 -1.1975 -0.1107 9 6 1.2590 -2.4945 0.1561 10 1 0.3247 -2.3162 0.6885 11 6 0.9554 -3.0769 -1.2258 12 9 0.0742 -2.2293 -1.9057 13 6 2.1171 -3.4827 0.9487 14 6 1.3379 -4.7943 1.1769 15 6 1.7489 -5.2370 2.6031 16 6 1.8306 -3.8927 3.3681 17 6 2.4303 -2.9093 2.3419 18 1 -0.4850 -0.8373 0.0680 19 1 1.8817 -3.1686 -1.7929 20 1 0.4993 -4.0604 -1.1133 21 1 3.0436 -3.6864 0.4118 22 1 0.2641 -4.6137 1.1282 23 1 1.6329 -5.5457 0.4444 24 1 2.7194 -5.7331 2.5891 25 1 0.9915 -5.8861 3.0426 26 1 2.4851 -3.9859 4.2346 27 1 0.8372 -3.5652 3.6750 28 1 3.5087 -2.8357 2.4815 29 1 1.9706 -1.9274 2.4535 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257913060.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:59 Heat of formation + Delta-G solvation = -104.769592 kcal Electronic energy + Delta-G solvation = -11946.514709 eV Core-core repulsion = 9781.669336 eV Total energy + Delta-G solvation = -2164.845373 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.112 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.21875 -39.39690 -35.54120 -32.52977 -29.58520 -27.80811 -26.42933 -23.13420 -21.38684 -20.48675 -18.71153 -16.87658 -16.68362 -16.47886 -15.66479 -15.60041 -15.11912 -14.60516 -14.13666 -13.88563 -12.81357 -12.68872 -12.33697 -12.05035 -11.94614 -11.82667 -11.81052 -11.58023 -11.44506 -11.21352 -11.00928 -10.51900 -10.28553 -8.54048 -6.22563 1.51694 1.60755 1.75775 2.59301 3.26076 3.83581 3.89158 3.92818 4.19545 4.29345 4.42556 4.62385 4.69078 4.77379 4.85269 4.88966 4.96354 5.07888 5.09481 5.18599 5.34427 5.43118 5.52622 5.60164 5.77568 6.12944 6.29700 6.72502 7.57446 8.86963 Molecular weight = 186.11amu Principal moments of inertia in cm(-1) A = 0.039259 B = 0.015207 C = 0.012072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.036627 B = 1840.764328 C = 2318.886862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.029 4.029 3 Si 1.111 2.889 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.280 1.280 7 C -0.598 4.598 8 H 0.043 0.957 9 C 0.002 3.998 10 H 0.013 0.987 11 C 0.063 3.937 12 F -0.241 7.241 13 C -0.073 4.073 14 C -0.124 4.124 15 C -0.113 4.113 16 C -0.123 4.123 17 C -0.108 4.108 18 H 0.260 0.740 19 H 0.059 0.941 20 H 0.069 0.931 21 H 0.057 0.943 22 H 0.050 0.950 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.640 -8.896 4.106 10.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.229 4.229 3 Si 0.935 3.065 4 H -0.196 1.196 5 H -0.213 1.213 6 H -0.206 1.206 7 C -0.636 4.636 8 H 0.062 0.938 9 C -0.017 4.017 10 H 0.031 0.969 11 C 0.008 3.992 12 F -0.222 7.222 13 C -0.092 4.092 14 C -0.161 4.161 15 C -0.150 4.150 16 C -0.160 4.160 17 C -0.146 4.146 18 H 0.071 0.929 19 H 0.078 0.922 20 H 0.088 0.912 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.093 0.907 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.428 -7.248 4.029 9.401 hybrid contribution -0.133 -1.269 -0.245 1.299 sum 4.295 -8.517 3.784 10.262 Atomic orbital electron populations 1.70795 1.07847 1.30718 1.47631 1.27080 0.96602 1.06185 0.93014 0.83009 0.74465 0.71956 0.77102 1.19570 1.21273 1.20633 1.22101 0.94420 0.92758 1.54287 0.93849 1.19620 0.95795 0.94869 0.91455 0.96918 1.22473 0.90768 0.90724 0.95239 1.92664 1.72070 1.75250 1.82243 1.21607 0.97673 0.93997 0.95888 1.22522 0.99183 0.96266 0.98129 1.22449 1.01993 0.96384 0.94218 1.22380 1.00314 0.95450 0.97898 1.22000 0.99833 0.98435 0.94298 0.92925 0.92245 0.91250 0.92474 0.93140 0.90657 0.90300 0.90439 0.90380 0.93102 0.92382 0.94407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.63 13.36 21.45 0.29 -58.34 15 2 C -0.03 -1.71 5.45 84.66 0.46 -1.25 15 3 Si 1.11 51.90 29.91 68.60 2.05 53.95 15 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 5 H -0.29 -13.22 7.11 99.48 0.71 -12.52 15 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 7 C -0.60 -33.25 7.02 25.60 0.18 -33.07 15 8 H 0.04 2.40 7.82 -2.91 -0.02 2.38 15 9 C 0.00 0.09 1.24 -11.54 -0.01 0.07 15 10 H 0.01 0.70 6.47 -2.39 -0.02 0.68 15 11 C 0.06 2.87 6.78 71.98 0.49 3.35 15 12 F -0.24 -12.95 16.24 44.97 0.73 -12.22 15 13 C -0.07 -2.85 2.50 -10.07 -0.03 -2.88 15 14 C -0.12 -3.86 5.23 31.67 0.17 -3.70 15 15 C -0.11 -2.92 6.91 31.88 0.22 -2.70 15 16 C -0.12 -3.68 6.83 31.67 0.22 -3.46 15 17 C -0.11 -4.10 6.02 31.32 0.19 -3.91 15 18 H 0.26 16.61 5.93 -92.71 -0.55 16.06 15 19 H 0.06 2.56 8.14 -2.39 -0.02 2.54 15 20 H 0.07 2.65 7.12 -2.39 -0.02 2.63 15 21 H 0.06 2.20 8.14 -2.39 -0.02 2.18 15 22 H 0.05 1.69 7.77 -2.39 -0.02 1.67 15 23 H 0.07 2.04 8.14 -2.39 -0.02 2.02 15 24 H 0.08 1.78 8.14 -2.39 -0.02 1.76 15 25 H 0.08 1.71 8.14 -2.39 -0.02 1.69 15 26 H 0.08 1.96 8.14 -2.39 -0.02 1.94 15 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 15 28 H 0.06 2.05 8.14 -2.39 -0.02 2.03 15 29 H 0.04 1.72 7.10 -2.39 -0.02 1.70 15 Total: -1.00 -64.97 236.16 6.27 -58.69 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.33 Total: 5.45 kcal Atomic # 6 Polarization: -49.42 SS G_CDS: 1.88 Total: -47.54 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 0.29 Total: -58.34 kcal Atomic # 9 Polarization: -12.95 SS G_CDS: 0.73 Total: -12.22 kcal Atomic # 14 Polarization: 51.90 SS G_CDS: 2.05 Total: 53.95 kcal Total: -64.97 6.27 -58.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257913060.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.077 kcal (2) G-P(sol) polarization free energy of solvation -64.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds