Wall clock time and date at job start Mon Mar 30 2020 02:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00136 * 2 1 4 4 H 1.48502 * 109.47420 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47137 * 299.99678 * 3 2 1 6 6 H 1.48500 * 109.47278 * 59.99787 * 3 2 1 7 7 C 1.37877 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00523 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99699 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.79425 * 60.49525 * 9 7 2 11 11 C 1.54271 * 109.63174 * 299.99475 * 9 7 2 12 12 C 1.45992 * 111.66240 * 162.23502 * 11 9 7 13 13 O 1.44223 * 112.10027 * 60.10332 * 12 11 9 14 14 C 1.39961 * 112.36704 * 277.39509 * 13 12 11 15 15 C 1.54347 * 112.57443 * 97.13368 * 14 13 12 16 16 C 1.50344 * 109.58703 * 181.04724 * 9 7 2 17 17 H 1.09000 * 108.82719 * 90.96205 * 16 9 7 18 18 O 1.42903 * 108.73146 * 332.64784 * 16 9 7 19 19 H 0.97002 * 120.00154 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.03031 * 41.69461 * 11 9 7 21 21 H 1.08996 * 109.02957 * 282.77325 * 11 9 7 22 22 H 1.09004 * 108.94786 * 180.77773 * 12 11 9 23 23 H 1.08992 * 108.95243 * 299.42548 * 12 11 9 24 24 H 1.09008 * 108.86408 * 217.93306 * 14 13 12 25 25 H 1.09006 * 108.86217 * 336.44012 * 14 13 12 26 26 H 1.08993 * 109.08854 * 79.82356 * 15 14 13 27 27 H 1.09007 * 109.08701 * 198.87740 * 15 14 13 28 28 H 0.96696 * 113.99785 * 176.69251 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6293 -2.5665 -0.8923 11 6 0.3622 -2.5845 1.2586 12 6 -0.6791 -3.5977 1.1151 13 8 -0.1297 -4.9138 0.9005 14 6 0.2083 -5.1378 -0.4391 15 6 1.7059 -4.8932 -0.7211 16 6 2.2254 -3.6438 0.0271 17 1 2.4235 -3.9132 1.0645 18 8 3.4481 -3.2197 -0.5790 19 1 -0.4850 0.8400 0.0004 20 1 -0.1061 -1.6152 1.4294 21 1 0.9851 -2.8343 2.1175 22 1 -1.2871 -3.6109 2.0198 23 1 -1.3131 -3.3361 0.2681 24 1 -0.0349 -6.1688 -0.6963 25 1 -0.3808 -4.4700 -1.0677 26 1 2.2763 -5.7643 -0.3989 27 1 1.8483 -4.7506 -1.7924 28 1 4.1493 -3.8851 -0.5571 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258431956.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:06 Heat of formation + Delta-G solvation = -124.170904 kcal Electronic energy + Delta-G solvation = -12232.814638 eV Core-core repulsion = 10054.755172 eV Total energy + Delta-G solvation = -2178.059466 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.52815 -37.76153 -35.59326 -33.10199 -32.62890 -28.87536 -26.27903 -24.80367 -22.32775 -20.81156 -18.83233 -17.64362 -17.38846 -16.77767 -16.35815 -15.91704 -15.20278 -14.50464 -14.30399 -13.63814 -13.38324 -13.04820 -12.92781 -12.56432 -12.50869 -12.11627 -11.60337 -11.50180 -11.17319 -10.92773 -10.56093 -10.43201 -10.18149 -8.06903 -6.15173 1.39401 1.41471 1.53963 2.46317 3.03696 3.18780 3.70339 4.03553 4.10125 4.27731 4.38569 4.55306 4.59750 4.81864 4.84992 4.87633 5.01444 5.22591 5.32600 5.42459 5.62966 5.89952 6.03735 6.38502 6.46126 6.93796 7.20155 7.54838 8.98820 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.050136 B = 0.015077 C = 0.012395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.343096 B = 1856.692806 C = 2258.443255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.006 3.994 3 Si 0.952 3.048 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.508 4.508 8 H 0.058 0.942 9 C 0.049 3.951 10 H 0.002 0.998 11 C -0.142 4.142 12 C 0.073 3.927 13 O -0.387 6.387 14 C 0.062 3.938 15 C -0.171 4.171 16 C 0.118 3.882 17 H 0.031 0.969 18 O -0.570 6.570 19 H 0.259 0.741 20 H 0.081 0.919 21 H 0.035 0.965 22 H 0.093 0.907 23 H 0.043 0.957 24 H 0.104 0.896 25 H 0.040 0.960 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.842 -8.200 0.185 8.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.191 4.191 3 Si 0.779 3.221 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.546 4.546 8 H 0.076 0.924 9 C 0.031 3.969 10 H 0.020 0.980 11 C -0.180 4.180 12 C -0.002 4.002 13 O -0.306 6.306 14 C -0.015 4.015 15 C -0.209 4.209 16 C 0.060 3.940 17 H 0.049 0.951 18 O -0.375 6.375 19 H 0.068 0.932 20 H 0.099 0.901 21 H 0.054 0.946 22 H 0.111 0.889 23 H 0.062 0.938 24 H 0.122 0.878 25 H 0.058 0.942 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 0.375 -7.667 0.237 7.680 hybrid contribution 0.645 0.804 -0.177 1.046 sum 1.020 -6.863 0.060 6.938 Atomic orbital electron populations 1.69993 1.06840 1.26878 1.52480 1.25713 0.95749 1.02139 0.95527 0.85592 0.78942 0.80060 0.77549 1.19841 1.20783 1.20436 1.21491 0.93645 0.91316 1.48183 0.92367 1.18412 0.92446 0.92696 0.93382 0.98043 1.21038 0.98431 1.00121 0.98413 1.21559 0.95112 0.82094 1.01475 1.87642 1.82818 1.32768 1.27412 1.22308 0.94090 1.01706 0.83421 1.23305 0.98215 0.98203 1.01159 1.21731 0.85080 0.93439 0.93751 0.95058 1.86844 1.23547 1.44533 1.82590 0.93153 0.90100 0.94632 0.88887 0.93844 0.87767 0.94187 0.89897 0.90833 0.78334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.43 11.37 21.45 0.24 -53.18 15 2 C 0.01 0.33 5.20 84.65 0.44 0.77 15 3 Si 0.95 45.36 29.54 68.60 2.03 47.39 15 4 H -0.27 -12.95 7.11 99.48 0.71 -12.24 15 5 H -0.28 -13.15 7.11 99.48 0.71 -12.44 15 6 H -0.28 -12.83 7.11 99.48 0.71 -12.13 15 7 C -0.51 -29.30 8.10 25.60 0.21 -29.09 15 8 H 0.06 3.45 6.45 -2.91 -0.02 3.43 15 9 C 0.05 2.52 1.74 -11.96 -0.02 2.50 15 10 H 0.00 0.08 7.07 -2.39 -0.02 0.07 15 11 C -0.14 -6.76 4.76 28.87 0.14 -6.62 15 12 C 0.07 2.91 6.11 69.83 0.43 3.34 15 13 O -0.39 -14.42 10.35 -140.36 -1.45 -15.88 15 14 C 0.06 2.06 6.09 72.44 0.44 2.50 15 15 C -0.17 -5.74 5.87 31.60 0.19 -5.56 15 16 C 0.12 5.08 2.91 30.29 0.09 5.17 15 17 H 0.03 1.36 7.33 -2.39 -0.02 1.34 15 18 O -0.57 -24.30 11.16 -148.98 -1.66 -25.97 15 19 H 0.26 14.29 8.31 -92.71 -0.77 13.52 15 20 H 0.08 4.33 5.82 -2.39 -0.01 4.32 15 21 H 0.03 1.66 7.53 -2.39 -0.02 1.64 15 22 H 0.09 3.24 8.14 -2.38 -0.02 3.22 15 23 H 0.04 1.76 7.34 -2.39 -0.02 1.75 15 24 H 0.10 2.68 8.14 -2.38 -0.02 2.66 15 25 H 0.04 1.41 6.52 -2.38 -0.02 1.40 15 26 H 0.08 2.30 8.14 -2.39 -0.02 2.28 15 27 H 0.07 2.42 8.14 -2.38 -0.02 2.40 15 28 H 0.37 11.25 9.08 -74.06 -0.67 10.58 15 Total: -1.00 -64.40 222.53 1.54 -62.85 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.48 Total: 11.79 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: 1.91 Total: -27.01 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.24 Total: -53.18 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -3.12 Total: -41.84 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -64.40 1.54 -62.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258431956.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.317 kcal (2) G-P(sol) polarization free energy of solvation -64.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds