Wall clock time and date at job start Mon Mar 30 2020 02:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99644 * 2 1 4 4 H 1.48499 * 109.47197 * 270.00167 * 3 2 1 5 5 H 1.48497 * 109.47213 * 29.99936 * 3 2 1 6 6 H 1.48501 * 109.47310 * 150.00411 * 3 2 1 7 7 C 1.37878 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99919 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99880 * 359.97438 * 7 2 1 10 10 H 1.08997 * 108.69840 * 298.36283 * 9 7 2 11 11 C 1.50985 * 108.81054 * 56.71991 * 9 7 2 12 12 C 1.54636 * 109.22272 * 213.18441 * 11 9 7 13 13 O 1.36327 * 111.07494 * 285.35699 * 12 11 9 14 14 C 1.43326 * 117.98338 * 61.87875 * 13 12 11 15 15 C 1.51073 * 107.49843 * 276.27955 * 14 13 12 16 16 C 1.53466 * 111.24699 * 94.54726 * 15 14 13 17 17 H 1.08998 * 109.04623 * 79.83637 * 16 15 14 18 18 O 1.42899 * 109.04138 * 198.71439 * 16 15 14 19 19 H 0.97001 * 119.99872 * 0.02562 * 1 2 3 20 20 H 1.08994 * 109.51377 * 333.10762 * 11 9 7 21 21 H 1.09001 * 109.51210 * 93.20853 * 11 9 7 22 22 H 1.08999 * 109.15850 * 45.76769 * 12 11 9 23 23 H 1.09001 * 109.15258 * 164.94598 * 12 11 9 24 24 H 1.09004 * 109.76869 * 156.82158 * 14 13 12 25 25 H 1.09001 * 109.91959 * 35.82619 * 14 13 12 26 26 H 1.09002 * 109.11561 * 334.10808 * 15 14 13 27 27 H 1.09004 * 109.11342 * 214.98086 * 15 14 13 28 28 H 0.96701 * 114.00437 * 299.99860 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6521 -2.5567 0.9082 11 6 0.3282 -2.5284 -1.1950 12 6 -0.9525 -3.3143 -0.8296 13 8 -0.7094 -4.6550 -0.7866 14 6 0.2398 -5.1358 0.1736 15 6 1.6157 -4.9810 -0.4308 16 6 2.2664 -3.6592 -0.0011 17 1 2.6757 -3.7740 1.0026 18 8 3.3296 -3.3479 -0.9036 19 1 -0.4850 0.8401 -0.0004 20 1 0.0624 -1.5090 -1.4748 21 1 0.8297 -3.0163 -2.0308 22 1 -1.3088 -2.9838 0.1460 23 1 -1.7205 -3.1137 -1.5767 24 1 0.0462 -6.1867 0.3891 25 1 0.1700 -4.5502 1.0903 26 1 1.5325 -5.0012 -1.5175 27 1 2.2438 -5.8103 -0.1056 28 1 4.0273 -4.0168 -0.9353 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258431967.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:08 Heat of formation + Delta-G solvation = -101.151105 kcal Electronic energy + Delta-G solvation = -12272.618257 eV Core-core repulsion = 10095.557004 eV Total energy + Delta-G solvation = -2177.061253 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.05173 -36.19869 -33.61095 -31.57354 -30.53214 -26.61799 -24.56617 -23.08575 -20.99563 -18.61580 -16.90976 -16.06259 -15.55240 -15.18577 -14.72265 -14.26133 -13.46154 -12.56937 -12.41313 -12.34460 -11.51825 -11.21172 -10.91738 -10.85976 -10.41158 -10.27395 -9.97558 -9.82092 -9.19841 -9.05546 -8.67368 -8.50234 -8.13606 -5.91558 -3.95694 3.35852 3.41825 3.46132 4.49640 4.55699 5.19424 5.37783 5.40616 5.73808 5.79442 6.04472 6.12216 6.16962 6.40384 6.49531 6.59771 6.75097 6.78380 7.21222 7.52630 7.60444 7.98472 8.11943 8.36061 8.51959 8.66921 9.09425 9.67045 11.13150 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.050911 B = 0.015216 C = 0.012480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.852244 B = 1839.758254 C = 2243.104156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.051 3.949 3 Si 0.893 3.107 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.491 4.491 8 H 0.062 0.938 9 C 0.049 3.951 10 H 0.030 0.970 11 C -0.138 4.138 12 C 0.074 3.926 13 O -0.397 6.397 14 C 0.075 3.925 15 C -0.184 4.184 16 C 0.111 3.889 17 H 0.034 0.966 18 O -0.546 6.546 19 H 0.258 0.742 20 H 0.102 0.898 21 H 0.036 0.964 22 H 0.034 0.966 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.236 -7.558 0.262 7.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.148 4.148 3 Si 0.722 3.278 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.530 4.530 8 H 0.081 0.919 9 C 0.031 3.969 10 H 0.048 0.952 11 C -0.176 4.176 12 C -0.003 4.003 13 O -0.316 6.316 14 C -0.001 4.001 15 C -0.222 4.222 16 C 0.052 3.948 17 H 0.052 0.948 18 O -0.348 6.348 19 H 0.068 0.932 20 H 0.121 0.879 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.091 0.909 24 H 0.097 0.903 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.625 -6.990 0.062 7.018 hybrid contribution 0.961 0.633 0.304 1.191 sum 1.587 -6.357 0.365 6.562 Atomic orbital electron populations 1.69930 1.05758 1.26213 1.51693 1.24977 0.94901 0.99062 0.95869 0.86574 0.79774 0.83503 0.77992 1.20844 1.21471 1.20092 1.21211 0.93520 0.89824 1.48413 0.91943 1.18692 0.91596 0.91667 0.94929 0.95230 1.22212 0.94422 1.02361 0.98633 1.21862 0.98119 0.80371 0.99985 1.86191 1.61832 1.25048 1.58533 1.22171 0.87778 0.98307 0.91840 1.22807 0.97658 0.98711 1.03032 1.22447 0.88431 0.93840 0.90056 0.94836 1.86838 1.33854 1.48143 1.65938 0.93205 0.87941 0.94509 0.94758 0.90857 0.90286 0.92532 0.90298 0.92796 0.80890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.64 11.29 55.43 0.63 -25.01 15 2 C 0.05 1.44 5.04 -17.82 -0.09 1.36 15 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 15 4 H -0.28 -6.93 7.11 56.52 0.40 -6.52 15 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 15 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 7 C -0.49 -13.90 8.05 -34.44 -0.28 -14.17 15 8 H 0.06 1.81 7.03 -52.49 -0.37 1.44 15 9 C 0.05 1.25 1.53 -92.18 -0.14 1.10 15 10 H 0.03 0.80 6.60 -51.93 -0.34 0.46 15 11 C -0.14 -3.41 4.76 -26.88 -0.13 -3.54 15 12 C 0.07 1.60 6.39 38.02 0.24 1.85 15 13 O -0.40 -8.03 9.91 -20.79 -0.21 -8.24 15 14 C 0.08 1.32 6.47 36.19 0.23 1.55 15 15 C -0.18 -3.25 5.04 -27.46 -0.14 -3.39 15 16 C 0.11 2.34 3.13 -25.89 -0.08 2.26 15 17 H 0.03 0.68 8.14 -51.93 -0.42 0.26 15 18 O -0.55 -11.58 11.90 -35.23 -0.42 -12.00 15 19 H 0.26 7.09 8.31 -40.82 -0.34 6.75 15 20 H 0.10 2.84 5.56 -51.93 -0.29 2.55 15 21 H 0.04 0.90 7.17 -51.93 -0.37 0.53 15 22 H 0.03 0.78 7.68 -51.93 -0.40 0.38 15 23 H 0.07 1.49 8.14 -51.93 -0.42 1.07 15 24 H 0.08 1.13 8.14 -51.93 -0.42 0.71 15 25 H 0.06 1.03 6.67 -51.93 -0.35 0.68 15 26 H 0.08 1.50 7.31 -51.93 -0.38 1.12 15 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 28 H 0.35 5.38 9.08 45.56 0.41 5.79 15 LS Contribution 222.34 15.07 3.35 3.35 Total: -1.00 -30.36 222.34 -4.96 -35.32 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -2.91 Total: 2.63 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -0.38 Total: -12.98 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.63 Total: -25.01 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.63 Total: -20.24 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -30.36 -4.96 -35.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258431967.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.829 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds