Wall clock time and date at job start Mon Mar 30 2020 02:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99644 * 2 1 4 4 H 1.48499 * 109.47197 * 270.00167 * 3 2 1 5 5 H 1.48497 * 109.47213 * 29.99936 * 3 2 1 6 6 H 1.48501 * 109.47310 * 150.00411 * 3 2 1 7 7 C 1.37878 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99919 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99880 * 359.97438 * 7 2 1 10 10 H 1.08997 * 108.69840 * 298.36283 * 9 7 2 11 11 C 1.50985 * 108.81054 * 56.71991 * 9 7 2 12 12 C 1.54636 * 109.22272 * 213.18441 * 11 9 7 13 13 O 1.36327 * 111.07494 * 285.35699 * 12 11 9 14 14 C 1.43326 * 117.98338 * 61.87875 * 13 12 11 15 15 C 1.51073 * 107.49843 * 276.27955 * 14 13 12 16 16 C 1.53466 * 111.24699 * 94.54726 * 15 14 13 17 17 H 1.08998 * 109.04623 * 79.83637 * 16 15 14 18 18 O 1.42899 * 109.04138 * 198.71439 * 16 15 14 19 19 H 0.97001 * 119.99872 * 0.02562 * 1 2 3 20 20 H 1.08994 * 109.51377 * 333.10762 * 11 9 7 21 21 H 1.09001 * 109.51210 * 93.20853 * 11 9 7 22 22 H 1.08999 * 109.15850 * 45.76769 * 12 11 9 23 23 H 1.09001 * 109.15258 * 164.94598 * 12 11 9 24 24 H 1.09004 * 109.76869 * 156.82158 * 14 13 12 25 25 H 1.09001 * 109.91959 * 35.82619 * 14 13 12 26 26 H 1.09002 * 109.11561 * 334.10808 * 15 14 13 27 27 H 1.09004 * 109.11342 * 214.98086 * 15 14 13 28 28 H 0.96701 * 114.00437 * 299.99860 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6521 -2.5567 0.9082 11 6 0.3282 -2.5284 -1.1950 12 6 -0.9525 -3.3143 -0.8296 13 8 -0.7094 -4.6550 -0.7866 14 6 0.2398 -5.1358 0.1736 15 6 1.6157 -4.9810 -0.4308 16 6 2.2664 -3.6592 -0.0011 17 1 2.6757 -3.7740 1.0026 18 8 3.3296 -3.3479 -0.9036 19 1 -0.4850 0.8401 -0.0004 20 1 0.0624 -1.5090 -1.4748 21 1 0.8297 -3.0163 -2.0308 22 1 -1.3088 -2.9838 0.1460 23 1 -1.7205 -3.1137 -1.5767 24 1 0.0462 -6.1867 0.3891 25 1 0.1700 -4.5502 1.0903 26 1 1.5325 -5.0012 -1.5175 27 1 2.2438 -5.8103 -0.1056 28 1 4.0273 -4.0168 -0.9353 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258431967.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:07 Heat of formation + Delta-G solvation = -123.592920 kcal Electronic energy + Delta-G solvation = -12273.591407 eV Core-core repulsion = 10095.557004 eV Total energy + Delta-G solvation = -2178.034403 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.69801 -37.84720 -35.59342 -33.18750 -32.43478 -28.55765 -26.21399 -24.99416 -22.65882 -20.40167 -18.80752 -17.76210 -17.24500 -16.99399 -16.48636 -16.06858 -15.10817 -14.33687 -14.21019 -14.08089 -13.27861 -12.92321 -12.76512 -12.72786 -12.22440 -12.07094 -11.89981 -11.67316 -10.91809 -10.86360 -10.56135 -10.30513 -10.11264 -8.05526 -6.16664 1.39608 1.40906 1.50783 2.44888 3.02709 3.19328 3.72004 3.98468 4.23572 4.32812 4.37439 4.51074 4.67994 4.73404 4.79974 4.90086 5.13211 5.25920 5.33397 5.58619 5.60322 5.86797 6.08557 6.44387 6.77925 6.92904 7.20541 7.50457 8.97453 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.050911 B = 0.015216 C = 0.012480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.852244 B = 1839.758254 C = 2243.104156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.005 3.995 3 Si 0.952 3.048 4 H -0.280 1.280 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.050 0.950 9 C 0.043 3.957 10 H 0.006 0.994 11 C -0.130 4.130 12 C 0.090 3.910 13 O -0.400 6.400 14 C 0.067 3.933 15 C -0.172 4.172 16 C 0.112 3.888 17 H 0.040 0.960 18 O -0.571 6.571 19 H 0.259 0.741 20 H 0.068 0.932 21 H 0.031 0.969 22 H 0.019 0.981 23 H 0.086 0.914 24 H 0.123 0.877 25 H 0.046 0.954 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.795 -8.697 0.350 8.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.192 4.192 3 Si 0.778 3.222 4 H -0.206 1.206 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.552 4.552 8 H 0.068 0.932 9 C 0.025 3.975 10 H 0.024 0.976 11 C -0.168 4.168 12 C 0.012 3.988 13 O -0.319 6.319 14 C -0.009 4.009 15 C -0.210 4.210 16 C 0.053 3.947 17 H 0.058 0.942 18 O -0.376 6.376 19 H 0.068 0.932 20 H 0.087 0.913 21 H 0.049 0.951 22 H 0.037 0.963 23 H 0.104 0.896 24 H 0.141 0.859 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.116 0.884 28 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 1.200 -8.152 0.152 8.242 hybrid contribution 0.833 0.954 0.292 1.300 sum 2.033 -7.198 0.444 7.493 Atomic orbital electron populations 1.70044 1.06769 1.26871 1.51879 1.25690 0.95779 1.02114 0.95632 0.85653 0.78709 0.79859 0.77959 1.20628 1.20721 1.19734 1.21492 0.93172 0.91706 1.48813 0.93209 1.18675 0.92340 0.92579 0.93883 0.97593 1.22032 0.95784 1.00778 0.98203 1.21588 0.96806 0.80981 0.99443 1.86188 1.62638 1.23568 1.59466 1.22511 0.87208 1.00411 0.90722 1.22676 0.98167 0.97959 1.02199 1.22286 0.87847 0.93844 0.90695 0.94188 1.86748 1.34881 1.50102 1.65895 0.93179 0.91320 0.95075 0.96269 0.89647 0.85932 0.93550 0.91443 0.88415 0.77856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.25 11.29 21.45 0.24 -53.01 15 2 C 0.01 0.30 5.04 84.65 0.43 0.73 15 3 Si 0.95 45.34 29.54 68.60 2.03 47.37 15 4 H -0.28 -13.18 7.11 99.48 0.71 -12.48 15 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 15 6 H -0.27 -12.72 7.11 99.48 0.71 -12.02 15 7 C -0.51 -29.45 8.05 25.60 0.21 -29.24 15 8 H 0.05 2.91 7.03 -2.91 -0.02 2.89 15 9 C 0.04 2.22 1.53 -11.81 -0.02 2.20 15 10 H 0.01 0.34 6.60 -2.39 -0.02 0.32 15 11 C -0.13 -6.47 4.76 30.50 0.15 -6.33 15 12 C 0.09 3.87 6.39 72.54 0.46 4.33 15 13 O -0.40 -15.42 9.91 -97.30 -0.96 -16.39 15 14 C 0.07 2.15 6.47 71.35 0.46 2.62 15 15 C -0.17 -5.56 5.04 30.12 0.15 -5.41 15 16 C 0.11 4.58 3.13 31.14 0.10 4.67 15 17 H 0.04 1.56 8.14 -2.39 -0.02 1.54 15 18 O -0.57 -23.46 11.90 -148.98 -1.77 -25.23 15 19 H 0.26 14.38 8.31 -92.71 -0.77 13.61 15 20 H 0.07 3.90 5.56 -2.39 -0.01 3.89 15 21 H 0.03 1.54 7.17 -2.39 -0.02 1.52 15 22 H 0.02 0.88 7.68 -2.39 -0.02 0.86 15 23 H 0.09 3.43 8.14 -2.39 -0.02 3.41 15 24 H 0.12 2.93 8.14 -2.39 -0.02 2.92 15 25 H 0.05 1.61 6.67 -2.39 -0.02 1.59 15 26 H 0.07 2.38 7.31 -2.39 -0.02 2.36 15 27 H 0.10 2.34 8.14 -2.39 -0.02 2.32 15 28 H 0.37 10.70 9.08 -74.06 -0.67 10.02 15 Total: -1.00 -65.17 222.34 1.95 -63.23 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.48 Total: 10.47 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: 1.93 Total: -26.43 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.24 Total: -53.01 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -2.74 Total: -41.62 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -65.17 1.95 -63.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258431967.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.367 kcal (2) G-P(sol) polarization free energy of solvation -65.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds