Wall clock time and date at job start Mon Mar 30 2020 02:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99899 * 2 1 4 4 H 1.48498 * 109.47069 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47041 * 300.00132 * 3 2 1 6 6 H 1.48505 * 109.47176 * 60.00141 * 3 2 1 7 7 C 1.37875 * 120.00418 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00258 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99647 * 0.02562 * 7 2 1 10 10 H 1.08994 * 108.78581 * 58.40989 * 9 7 2 11 11 C 1.50982 * 108.81077 * 300.00231 * 9 7 2 12 12 C 1.54627 * 109.21328 * 146.81463 * 11 9 7 13 13 O 1.36320 * 111.08859 * 74.65060 * 12 11 9 14 14 C 1.43395 * 118.03193 * 298.11934 * 13 12 11 15 15 C 1.51073 * 107.46784 * 83.63730 * 14 13 12 16 16 C 1.53477 * 111.29491 * 265.51823 * 15 14 13 17 17 H 1.08993 * 108.98787 * 280.23550 * 16 15 14 18 18 O 1.42901 * 109.03969 * 161.31994 * 16 15 14 19 19 H 0.97002 * 119.99921 * 0.02562 * 1 2 3 20 20 H 1.08995 * 109.51738 * 26.88744 * 11 9 7 21 21 H 1.09006 * 109.55581 * 266.75793 * 11 9 7 22 22 H 1.08998 * 109.15170 * 314.23616 * 12 11 9 23 23 H 1.08995 * 109.15005 * 195.06573 * 12 11 9 24 24 H 1.09000 * 109.86156 * 203.12244 * 14 13 12 25 25 H 1.08999 * 109.86194 * 324.14538 * 14 13 12 26 26 H 1.08999 * 109.12139 * 25.98855 * 15 14 13 27 27 H 1.08997 * 109.11587 * 145.05913 * 15 14 13 28 28 H 0.96697 * 114.00293 * 57.85178 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 1 0.6078 -2.5323 -0.8809 11 6 0.3883 -2.5643 1.2356 12 6 -0.9093 -3.3400 0.9108 13 8 -0.6699 -4.6787 0.8163 14 6 0.2305 -5.1319 -0.2035 15 6 1.6345 -4.9924 0.3366 16 6 2.2641 -3.6579 -0.0857 17 1 2.6222 -3.7436 -1.1115 18 8 3.3710 -3.3727 0.7719 19 1 -0.4850 0.8401 -0.0004 20 1 0.1375 -1.5538 1.5582 21 1 0.9294 -3.0767 2.0311 22 1 -1.3130 -2.9811 -0.0359 23 1 -1.6394 -3.1620 1.7004 24 1 0.0269 -6.1763 -0.4398 25 1 0.1154 -4.5197 -1.0979 26 1 1.6053 -5.0447 1.4249 27 1 2.2458 -5.8112 -0.0427 28 1 4.0537 -4.0575 0.7741 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258431976.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:09 Heat of formation + Delta-G solvation = -124.755444 kcal Electronic energy + Delta-G solvation = -12266.761986 eV Core-core repulsion = 10088.677172 eV Total energy + Delta-G solvation = -2178.084814 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.69708 -37.84778 -35.56389 -33.18634 -32.47523 -28.54736 -26.22611 -24.99539 -22.66476 -20.41041 -18.82130 -17.73668 -17.24624 -16.98819 -16.47593 -16.08635 -15.12584 -14.34236 -14.21544 -14.06622 -13.28448 -12.95171 -12.78069 -12.71603 -12.23225 -12.05548 -11.93173 -11.67196 -10.90419 -10.85595 -10.56431 -10.31158 -10.13200 -8.07331 -6.16763 1.38160 1.40374 1.52235 2.44823 3.01736 3.19506 3.72202 3.98076 4.23503 4.32372 4.36590 4.50228 4.68265 4.72816 4.78771 4.89699 5.12854 5.25805 5.33055 5.55867 5.59620 5.87141 6.05562 6.43439 6.76921 6.93607 7.20316 7.50846 8.97814 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.050789 B = 0.015166 C = 0.012462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.171695 B = 1845.804588 C = 2246.375773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.006 3.994 3 Si 0.951 3.049 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.513 4.513 8 H 0.050 0.950 9 C 0.043 3.957 10 H 0.008 0.992 11 C -0.125 4.125 12 C 0.089 3.911 13 O -0.399 6.399 14 C 0.067 3.933 15 C -0.173 4.173 16 C 0.112 3.888 17 H 0.040 0.960 18 O -0.571 6.571 19 H 0.259 0.741 20 H 0.060 0.940 21 H 0.033 0.967 22 H 0.019 0.981 23 H 0.086 0.914 24 H 0.123 0.877 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.098 0.902 28 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.759 -8.808 -0.435 8.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.192 4.192 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.068 0.932 9 C 0.025 3.975 10 H 0.026 0.974 11 C -0.163 4.163 12 C 0.011 3.989 13 O -0.318 6.318 14 C -0.009 4.009 15 C -0.210 4.210 16 C 0.053 3.947 17 H 0.057 0.943 18 O -0.376 6.376 19 H 0.068 0.932 20 H 0.078 0.922 21 H 0.052 0.948 22 H 0.037 0.963 23 H 0.104 0.896 24 H 0.141 0.859 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.116 0.884 28 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 1.190 -8.261 -0.214 8.349 hybrid contribution 0.788 0.980 -0.320 1.297 sum 1.977 -7.282 -0.534 7.564 Atomic orbital electron populations 1.70064 1.06793 1.26855 1.51991 1.25695 0.95758 1.02123 0.95622 0.85610 0.78934 0.80164 0.77540 1.19811 1.20508 1.20772 1.21520 0.93207 0.91658 1.48793 0.93150 1.18678 0.92391 0.92577 0.93856 0.97443 1.21994 0.95792 1.00036 0.98507 1.21593 0.96600 0.81105 0.99585 1.86194 1.65871 1.23749 1.56004 1.22524 0.87891 1.00720 0.89719 1.22685 0.98063 0.97849 1.02447 1.22286 0.87064 0.93935 0.91375 0.94250 1.86748 1.33213 1.49347 1.68330 0.93198 0.92153 0.94792 0.96251 0.89570 0.85877 0.93589 0.91347 0.88385 0.77850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.50 11.57 21.45 0.25 -53.25 15 2 C 0.01 0.32 5.03 84.65 0.43 0.74 15 3 Si 0.95 45.40 29.54 68.60 2.03 47.43 15 4 H -0.27 -12.92 7.11 99.48 0.71 -12.21 15 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 15 6 H -0.28 -13.19 7.11 99.48 0.71 -12.49 15 7 C -0.51 -29.47 8.04 25.60 0.21 -29.27 15 8 H 0.05 2.96 6.96 -2.91 -0.02 2.94 15 9 C 0.04 2.20 1.48 -11.81 -0.02 2.18 15 10 H 0.01 0.42 6.60 -2.39 -0.02 0.40 15 11 C -0.12 -6.20 4.78 30.49 0.15 -6.05 15 12 C 0.09 3.82 6.39 72.54 0.46 4.28 15 13 O -0.40 -15.31 9.91 -97.22 -0.96 -16.27 15 14 C 0.07 2.14 6.48 71.35 0.46 2.60 15 15 C -0.17 -5.53 5.02 30.13 0.15 -5.38 15 16 C 0.11 4.57 3.14 31.14 0.10 4.67 15 17 H 0.04 1.55 8.14 -2.39 -0.02 1.53 15 18 O -0.57 -23.41 11.87 -148.98 -1.77 -25.18 15 19 H 0.26 14.39 8.31 -92.71 -0.77 13.62 15 20 H 0.06 3.41 5.86 -2.39 -0.01 3.39 15 21 H 0.03 1.66 7.17 -2.38 -0.02 1.64 15 22 H 0.02 0.89 7.68 -2.39 -0.02 0.87 15 23 H 0.09 3.43 8.14 -2.39 -0.02 3.41 15 24 H 0.12 2.93 8.14 -2.39 -0.02 2.91 15 25 H 0.05 1.59 6.67 -2.39 -0.02 1.58 15 26 H 0.07 2.38 7.31 -2.39 -0.02 2.36 15 27 H 0.10 2.33 8.14 -2.39 -0.02 2.31 15 28 H 0.37 10.66 9.05 -74.06 -0.67 9.99 15 Total: -1.00 -65.41 222.73 1.96 -63.45 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.48 Total: 10.04 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 1.93 Total: -26.22 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: 0.25 Total: -53.25 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -2.73 Total: -41.45 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -65.41 1.96 -63.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258431976.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.307 kcal (2) G-P(sol) polarization free energy of solvation -65.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds