Wall clock time and date at job start Mon Mar 30 2020 02:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99769 * 2 1 4 4 H 1.48491 * 109.47083 * 240.00274 * 3 2 1 5 5 H 1.48496 * 109.47141 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46782 * 120.00300 * 3 2 1 7 7 C 1.37874 * 120.00423 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00045 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99588 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.63259 * 299.59859 * 9 7 2 11 11 C 1.54258 * 109.63453 * 60.00476 * 9 7 2 12 12 C 1.45986 * 111.73507 * 197.95423 * 11 9 7 13 13 O 1.44234 * 112.09232 * 299.92937 * 12 11 9 14 14 C 1.39965 * 112.37717 * 82.57152 * 13 12 11 15 15 C 1.54346 * 112.57873 * 262.88453 * 14 13 12 16 16 C 1.50290 * 109.79961 * 179.09495 * 9 7 2 17 17 H 1.09002 * 108.78570 * 269.00727 * 16 9 7 18 18 O 1.42903 * 108.78753 * 27.21410 * 16 9 7 19 19 H 0.96999 * 120.00074 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.03329 * 77.37103 * 11 9 7 21 21 H 1.08999 * 109.02575 * 318.53229 * 11 9 7 22 22 H 1.08996 * 108.96092 * 60.60899 * 12 11 9 23 23 H 1.09010 * 108.95784 * 179.26024 * 12 11 9 24 24 H 1.08998 * 108.85851 * 142.08514 * 14 13 12 25 25 H 1.09002 * 108.85864 * 23.68599 * 14 13 12 26 26 H 1.09002 * 109.08446 * 280.17956 * 15 14 13 27 27 H 1.09008 * 109.08565 * 161.20003 * 15 14 13 28 28 H 0.96696 * 113.99960 * 179.97438 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6292 -2.5629 0.8923 11 6 0.3624 -2.5846 -1.2585 12 6 -0.6822 -3.5942 -1.1149 13 8 -0.1369 -4.9117 -0.8974 14 6 0.1994 -5.1346 0.4428 15 6 1.6974 -4.8936 0.7259 16 6 2.2210 -3.6469 -0.0235 17 1 2.4194 -3.9182 -1.0604 18 8 3.4456 -3.2268 0.5815 19 1 -0.4850 0.8400 0.0004 20 1 0.9849 -2.8368 -2.1170 21 1 -0.1027 -1.6141 -1.4315 22 1 -1.3167 -3.3295 -0.2692 23 1 -1.2890 -3.6072 -2.0204 24 1 -0.0469 -6.1645 0.7013 25 1 -0.3899 -4.4655 1.0699 26 1 2.2656 -5.7669 0.4054 27 1 1.8393 -4.7512 1.7973 28 1 4.1272 -3.9123 0.6068 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258431985.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:10 Heat of formation + Delta-G solvation = -101.720162 kcal Electronic energy + Delta-G solvation = -12230.766829 eV Core-core repulsion = 10053.680900 eV Total energy + Delta-G solvation = -2177.085929 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.89268 -36.10450 -33.65180 -31.12204 -31.07765 -26.99153 -24.54540 -22.99402 -20.64823 -19.04311 -16.93244 -15.76667 -15.74402 -15.00430 -14.64814 -14.17194 -13.60203 -12.73406 -12.43971 -11.99532 -11.71638 -11.19868 -11.06104 -10.73918 -10.64315 -10.17587 -9.98232 -9.67673 -9.36232 -9.12827 -8.74272 -8.61037 -8.20123 -5.92142 -3.93423 3.38891 3.42019 3.46767 4.51368 4.55539 5.17731 5.42096 5.48077 5.63175 5.85796 5.93937 6.09353 6.21503 6.28255 6.34156 6.49969 6.75052 6.89899 7.13663 7.31502 7.56303 7.93329 7.97170 8.15967 8.44423 8.72457 9.14992 9.70540 11.15127 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.050102 B = 0.015073 C = 0.012392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.723444 B = 1857.153495 C = 2259.012654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.052 3.948 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.486 4.486 8 H 0.071 0.929 9 C 0.055 3.945 10 H 0.029 0.971 11 C -0.152 4.152 12 C 0.067 3.933 13 O -0.387 6.387 14 C 0.070 3.930 15 C -0.179 4.179 16 C 0.119 3.881 17 H 0.036 0.964 18 O -0.547 6.547 19 H 0.258 0.742 20 H 0.038 0.962 21 H 0.110 0.890 22 H 0.048 0.952 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.465 -7.281 -0.086 7.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.147 4.147 3 Si 0.723 3.277 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.524 4.524 8 H 0.089 0.911 9 C 0.036 3.964 10 H 0.047 0.953 11 C -0.190 4.190 12 C -0.008 4.008 13 O -0.306 6.306 14 C -0.008 4.008 15 C -0.218 4.218 16 C 0.061 3.939 17 H 0.054 0.946 18 O -0.349 6.349 19 H 0.068 0.932 20 H 0.057 0.943 21 H 0.127 0.873 22 H 0.067 0.933 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.011 -6.708 -0.175 6.711 hybrid contribution 0.714 0.514 0.179 0.897 sum 0.703 -6.194 0.003 6.234 Atomic orbital electron populations 1.69865 1.05860 1.26353 1.52133 1.25002 0.94864 0.99095 0.95774 0.86622 0.79493 0.83066 0.78567 1.20439 1.21553 1.20405 1.21138 0.93907 0.89447 1.47928 0.91118 1.18411 0.91897 0.92095 0.93962 0.95301 1.21197 0.97977 1.00383 0.99393 1.21720 0.96281 0.82346 1.00478 1.87650 1.82975 1.33760 1.26168 1.22066 0.94460 0.99749 0.84510 1.23401 0.97762 0.99221 1.01394 1.21886 0.85438 0.93380 0.93243 0.94587 1.86934 1.24030 1.40260 1.83634 0.93174 0.94337 0.87256 0.93340 0.91253 0.91653 0.93036 0.92912 0.91220 0.81242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.85 11.37 55.43 0.63 -25.22 15 2 C 0.05 1.46 5.20 -17.82 -0.09 1.37 15 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 15 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 7 C -0.49 -13.84 8.10 -34.44 -0.28 -14.12 15 8 H 0.07 2.06 6.47 -52.49 -0.34 1.72 15 9 C 0.05 1.39 1.73 -92.46 -0.16 1.23 15 10 H 0.03 0.79 7.07 -51.93 -0.37 0.43 15 11 C -0.15 -3.60 4.76 -29.40 -0.14 -3.74 15 12 C 0.07 1.37 6.11 33.83 0.21 1.57 15 13 O -0.39 -7.63 10.35 -32.83 -0.34 -7.97 15 14 C 0.07 1.25 6.09 37.86 0.23 1.48 15 15 C -0.18 -3.24 5.84 -25.19 -0.15 -3.38 15 16 C 0.12 2.61 2.92 -27.24 -0.08 2.53 15 17 H 0.04 0.80 7.33 -51.93 -0.38 0.42 15 18 O -0.55 -11.89 11.21 -35.23 -0.39 -12.29 15 19 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 20 H 0.04 0.90 7.53 -51.93 -0.39 0.51 15 21 H 0.11 2.88 5.82 -51.93 -0.30 2.57 15 22 H 0.05 0.99 7.35 -51.93 -0.38 0.61 15 23 H 0.07 1.26 8.14 -51.92 -0.42 0.84 15 24 H 0.07 0.97 8.14 -51.93 -0.42 0.55 15 25 H 0.05 0.94 6.54 -51.93 -0.34 0.60 15 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 27 H 0.07 1.22 8.14 -51.92 -0.42 0.80 15 28 H 0.34 5.54 9.04 45.56 0.41 5.95 15 LS Contribution 222.56 15.07 3.35 3.35 Total: -1.00 -30.32 222.56 -5.15 -35.47 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -2.92 Total: 2.71 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -0.46 Total: -13.06 kcal Atomic # 7 Polarization: -25.85 SS G_CDS: 0.63 Total: -25.22 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.73 Total: -20.26 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -30.32 -5.15 -35.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258431985.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.253 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds