Wall clock time and date at job start Mon Mar 30 2020 02:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99769 * 2 1 4 4 H 1.48491 * 109.47083 * 240.00274 * 3 2 1 5 5 H 1.48496 * 109.47141 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46782 * 120.00300 * 3 2 1 7 7 C 1.37874 * 120.00423 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00045 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99588 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.63259 * 299.59859 * 9 7 2 11 11 C 1.54258 * 109.63453 * 60.00476 * 9 7 2 12 12 C 1.45986 * 111.73507 * 197.95423 * 11 9 7 13 13 O 1.44234 * 112.09232 * 299.92937 * 12 11 9 14 14 C 1.39965 * 112.37717 * 82.57152 * 13 12 11 15 15 C 1.54346 * 112.57873 * 262.88453 * 14 13 12 16 16 C 1.50290 * 109.79961 * 179.09495 * 9 7 2 17 17 H 1.09002 * 108.78570 * 269.00727 * 16 9 7 18 18 O 1.42903 * 108.78753 * 27.21410 * 16 9 7 19 19 H 0.96999 * 120.00074 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.03329 * 77.37103 * 11 9 7 21 21 H 1.08999 * 109.02575 * 318.53229 * 11 9 7 22 22 H 1.08996 * 108.96092 * 60.60899 * 12 11 9 23 23 H 1.09010 * 108.95784 * 179.26024 * 12 11 9 24 24 H 1.08998 * 108.85851 * 142.08514 * 14 13 12 25 25 H 1.09002 * 108.85864 * 23.68599 * 14 13 12 26 26 H 1.09002 * 109.08446 * 280.17956 * 15 14 13 27 27 H 1.09008 * 109.08565 * 161.20003 * 15 14 13 28 28 H 0.96696 * 113.99960 * 179.97438 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6292 -2.5629 0.8923 11 6 0.3624 -2.5846 -1.2585 12 6 -0.6822 -3.5942 -1.1149 13 8 -0.1369 -4.9117 -0.8974 14 6 0.1994 -5.1346 0.4428 15 6 1.6974 -4.8936 0.7259 16 6 2.2210 -3.6469 -0.0235 17 1 2.4194 -3.9182 -1.0604 18 8 3.4456 -3.2268 0.5815 19 1 -0.4850 0.8400 0.0004 20 1 0.9849 -2.8368 -2.1170 21 1 -0.1027 -1.6141 -1.4315 22 1 -1.3167 -3.3295 -0.2692 23 1 -1.2890 -3.6072 -2.0204 24 1 -0.0469 -6.1645 0.7013 25 1 -0.3899 -4.4655 1.0699 26 1 2.2656 -5.7669 0.4054 27 1 1.8393 -4.7512 1.7973 28 1 4.1272 -3.9123 0.6068 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258431985.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:10 Heat of formation + Delta-G solvation = -124.204478 kcal Electronic energy + Delta-G solvation = -12231.741822 eV Core-core repulsion = 10053.680900 eV Total energy + Delta-G solvation = -2178.060922 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.52787 -37.76271 -35.59876 -33.10223 -32.62471 -28.87743 -26.28253 -24.80425 -22.33114 -20.82439 -18.83360 -17.59881 -17.39306 -16.76961 -16.35804 -15.93060 -15.23272 -14.50881 -14.29168 -13.65050 -13.35472 -13.03959 -12.92306 -12.55781 -12.55106 -12.12183 -11.59494 -11.49804 -11.19026 -10.91980 -10.56119 -10.44637 -10.17773 -8.06625 -6.15082 1.41261 1.42737 1.50671 2.46274 3.03642 3.18952 3.70589 4.02430 4.10101 4.27767 4.38052 4.55068 4.59889 4.81834 4.84732 4.87523 5.01313 5.22423 5.32623 5.42487 5.62577 5.89946 6.03777 6.38430 6.46126 6.93176 7.20181 7.54793 8.98715 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.050102 B = 0.015073 C = 0.012392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.723444 B = 1857.153495 C = 2259.012654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.007 3.993 3 Si 0.952 3.048 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.278 1.278 7 C -0.510 4.510 8 H 0.057 0.943 9 C 0.050 3.950 10 H 0.001 0.999 11 C -0.142 4.142 12 C 0.073 3.927 13 O -0.388 6.388 14 C 0.062 3.938 15 C -0.171 4.171 16 C 0.119 3.881 17 H 0.030 0.970 18 O -0.570 6.570 19 H 0.260 0.740 20 H 0.034 0.966 21 H 0.081 0.919 22 H 0.043 0.957 23 H 0.093 0.907 24 H 0.105 0.895 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.772 -8.214 -0.083 8.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.190 4.190 3 Si 0.778 3.222 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.549 4.549 8 H 0.076 0.924 9 C 0.031 3.969 10 H 0.020 0.980 11 C -0.180 4.180 12 C -0.002 4.002 13 O -0.307 6.307 14 C -0.015 4.015 15 C -0.209 4.209 16 C 0.060 3.940 17 H 0.048 0.952 18 O -0.375 6.375 19 H 0.069 0.931 20 H 0.053 0.947 21 H 0.099 0.901 22 H 0.062 0.938 23 H 0.111 0.889 24 H 0.122 0.878 25 H 0.058 0.942 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 0.310 -7.663 -0.170 7.671 hybrid contribution 0.661 0.784 0.201 1.045 sum 0.970 -6.879 0.030 6.947 Atomic orbital electron populations 1.69978 1.06828 1.27028 1.52286 1.25706 0.95749 1.02104 0.95485 0.85706 0.78433 0.79494 0.78521 1.19915 1.20724 1.20331 1.21415 0.93605 0.91354 1.48488 0.92442 1.18384 0.92468 0.92633 0.93377 0.98048 1.21031 0.98400 1.00152 0.98419 1.21559 0.95134 0.82058 1.01471 1.87645 1.82988 1.32645 1.27378 1.22303 0.94084 1.01740 0.83406 1.23309 0.98243 0.98191 1.01157 1.21720 0.85004 0.93516 0.93742 0.95162 1.86847 1.24866 1.42287 1.83547 0.93119 0.94685 0.90105 0.93830 0.88885 0.87763 0.94179 0.89839 0.90756 0.78328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.42 11.37 21.45 0.24 -53.17 15 2 C 0.01 0.38 5.20 84.65 0.44 0.82 15 3 Si 0.95 45.37 29.54 68.60 2.03 47.39 15 4 H -0.27 -12.74 7.11 99.48 0.71 -12.03 15 5 H -0.28 -12.97 7.11 99.48 0.71 -12.27 15 6 H -0.28 -13.12 7.11 99.48 0.71 -12.41 15 7 C -0.51 -29.47 8.10 25.60 0.21 -29.27 15 8 H 0.06 3.40 6.47 -2.91 -0.02 3.38 15 9 C 0.05 2.56 1.73 -11.99 -0.02 2.54 15 10 H 0.00 0.08 7.07 -2.39 -0.02 0.06 15 11 C -0.14 -6.77 4.76 28.87 0.14 -6.64 15 12 C 0.07 2.92 6.11 69.83 0.43 3.35 15 13 O -0.39 -14.43 10.35 -140.40 -1.45 -15.89 15 14 C 0.06 2.05 6.09 72.44 0.44 2.49 15 15 C -0.17 -5.73 5.84 31.60 0.18 -5.54 15 16 C 0.12 5.09 2.92 30.26 0.09 5.18 15 17 H 0.03 1.32 7.33 -2.39 -0.02 1.30 15 18 O -0.57 -24.31 11.21 -148.98 -1.67 -25.98 15 19 H 0.26 14.38 8.31 -92.71 -0.77 13.61 15 20 H 0.03 1.64 7.53 -2.39 -0.02 1.62 15 21 H 0.08 4.33 5.82 -2.39 -0.01 4.32 15 22 H 0.04 1.77 7.35 -2.39 -0.02 1.75 15 23 H 0.09 3.24 8.14 -2.38 -0.02 3.22 15 24 H 0.10 2.67 8.14 -2.39 -0.02 2.65 15 25 H 0.04 1.41 6.54 -2.39 -0.02 1.40 15 26 H 0.08 2.30 8.14 -2.39 -0.02 2.28 15 27 H 0.07 2.43 8.14 -2.38 -0.02 2.41 15 28 H 0.37 11.22 9.04 -74.06 -0.67 10.55 15 Total: -1.00 -64.39 222.56 1.54 -62.85 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.48 Total: 11.86 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: 1.90 Total: -27.07 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: 0.24 Total: -53.17 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -3.12 Total: -41.86 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -64.39 1.54 -62.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258431985.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.353 kcal (2) G-P(sol) polarization free energy of solvation -64.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds