Wall clock time and date at job start Mon Mar 30 2020 02:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47156 * 2 1 4 4 C 1.53002 * 109.62763 * 58.93663 * 3 2 1 5 5 O 1.43755 * 109.62988 * 298.54461 * 3 2 1 6 6 C 1.44784 * 104.81379 * 215.95475 * 5 3 2 7 7 C 1.54918 * 101.72222 * 36.10525 * 6 5 3 8 8 H 1.08994 * 110.69369 * 82.83097 * 7 6 5 9 9 C 1.50694 * 110.84160 * 205.97222 * 7 6 5 10 10 H 1.08006 * 120.00101 * 355.19254 * 9 7 6 11 11 C 1.37881 * 120.00068 * 175.19549 * 9 7 6 12 12 N 1.31512 * 119.99720 * 359.97438 * 11 9 7 13 13 Si 1.86793 * 120.00129 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.47038 * 60.00100 * 13 11 9 15 15 H 1.48501 * 109.47055 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47455 * 300.00145 * 13 11 9 17 17 O 1.43362 * 109.51221 * 179.25547 * 3 2 1 18 18 H 1.08997 * 109.47185 * 179.97438 * 1 2 3 19 19 H 1.09002 * 109.47511 * 300.00557 * 1 2 3 20 20 H 1.09008 * 109.47053 * 60.00442 * 1 2 3 21 21 H 1.08996 * 109.47224 * 240.00096 * 2 1 3 22 22 H 1.08998 * 109.47073 * 119.99563 * 2 1 3 23 23 H 1.09005 * 109.47200 * 300.30917 * 4 3 2 24 24 H 1.08998 * 109.47165 * 60.31186 * 4 3 2 25 25 H 1.09005 * 109.46788 * 180.31171 * 4 3 2 26 26 H 1.09007 * 110.97508 * 154.21270 * 6 5 3 27 27 H 1.09001 * 110.97847 * 277.99205 * 6 5 3 28 28 H 0.96993 * 120.00068 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5103 2.1750 1.2345 5 8 1.5910 2.1135 -1.1894 6 6 2.6832 2.9912 -1.5540 7 6 3.9162 2.1369 -1.1667 8 1 4.1588 1.4292 -1.9593 9 6 5.1013 3.0151 -0.8581 10 1 5.0330 4.0837 -0.9994 11 6 6.2729 2.4544 -0.3952 12 7 6.3558 1.1533 -0.2227 13 14 7.7421 3.5428 -0.0133 14 1 7.3723 4.5218 1.0402 15 1 8.8691 2.7028 0.4658 16 1 8.1528 4.2690 -1.2417 17 8 3.4735 1.4436 0.0176 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 0.4203 2.1716 1.2191 24 1 1.8625 1.6714 2.1347 25 1 1.8706 3.2037 1.2290 26 1 2.6745 3.2014 -2.6236 27 1 2.6513 3.9149 -0.9762 28 1 7.1801 0.7588 0.1025 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258582610.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:41 Heat of formation + Delta-G solvation = -123.434447 kcal Electronic energy + Delta-G solvation = -12102.222682 eV Core-core repulsion = 9924.195151 eV Total energy + Delta-G solvation = -2178.027531 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.12548 -35.91035 -35.26060 -34.25986 -30.79476 -29.44762 -26.74145 -25.07355 -23.10099 -21.16020 -18.85203 -17.70355 -17.16386 -16.67519 -16.01709 -15.42991 -14.65997 -14.45035 -14.16706 -13.80360 -13.53892 -13.09319 -12.97370 -12.77182 -12.60357 -12.49788 -12.33541 -12.07917 -11.85024 -11.21549 -10.84007 -10.65221 -10.01632 -8.21581 -6.45293 1.41262 1.44529 1.52467 2.37690 2.80288 3.08018 3.53250 3.99903 4.02299 4.24408 4.34052 4.41721 4.60216 4.62539 4.64947 4.79426 4.99129 5.02350 5.08364 5.14838 5.34775 5.43340 5.47286 5.63935 6.04771 6.53904 6.86001 7.31699 8.87038 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.068409 B = 0.011940 C = 0.011392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.201886 B = 2344.432970 C = 2457.269440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.122 4.122 3 C 0.226 3.774 4 C -0.159 4.159 5 O -0.393 6.393 6 C 0.031 3.969 7 C 0.178 3.822 8 H 0.005 0.995 9 C -0.562 4.562 10 H 0.075 0.925 11 C 0.023 3.977 12 N -0.902 5.902 13 Si 0.971 3.029 14 H -0.268 1.268 15 H -0.283 1.283 16 H -0.261 1.261 17 O -0.392 6.392 18 H 0.073 0.927 19 H 0.070 0.930 20 H 0.053 0.947 21 H 0.048 0.952 22 H 0.074 0.926 23 H 0.092 0.908 24 H 0.068 0.932 25 H 0.047 0.953 26 H 0.110 0.890 27 H 0.068 0.932 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.085 1.257 1.068 8.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.160 4.160 3 C 0.149 3.851 4 C -0.216 4.216 5 O -0.315 6.315 6 C -0.045 4.045 7 C 0.123 3.877 8 H 0.022 0.978 9 C -0.599 4.599 10 H 0.093 0.907 11 C -0.179 4.179 12 N -0.539 5.539 13 Si 0.794 3.206 14 H -0.193 1.193 15 H -0.208 1.208 16 H -0.185 1.185 17 O -0.314 6.314 18 H 0.092 0.908 19 H 0.088 0.912 20 H 0.072 0.928 21 H 0.067 0.933 22 H 0.093 0.907 23 H 0.111 0.889 24 H 0.087 0.913 25 H 0.066 0.934 26 H 0.128 0.872 27 H 0.087 0.913 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.063 0.979 1.171 8.206 hybrid contribution 1.066 0.305 0.077 1.111 sum -6.997 1.284 1.248 7.223 Atomic orbital electron populations 1.21693 0.92426 1.02659 1.02530 1.21794 0.98329 0.93745 1.02092 1.23669 0.82003 0.93207 0.86250 1.22307 1.02199 1.00185 0.96904 1.89015 1.40213 1.57528 1.44695 1.24390 0.84588 0.93738 1.01789 1.21147 0.92870 0.89563 0.84140 0.97755 1.21373 0.96443 0.94017 1.48116 0.90717 1.26025 1.01906 0.96338 0.93681 1.70178 1.27798 1.12069 1.43816 0.85439 0.77581 0.78408 0.79156 1.19277 1.20799 1.18537 1.89152 1.17544 1.78759 1.45911 0.90847 0.91159 0.92774 0.93310 0.90693 0.88902 0.91260 0.93360 0.87236 0.91337 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.41 71.98 0.68 -3.06 15 2 C -0.12 -4.46 5.59 30.60 0.17 -4.29 15 3 C 0.23 9.67 1.14 30.60 0.03 9.70 15 4 C -0.16 -5.70 8.83 71.98 0.64 -5.06 15 5 O -0.39 -16.73 10.40 -126.22 -1.31 -18.04 15 6 C 0.03 1.36 7.34 72.64 0.53 1.89 15 7 C 0.18 9.64 3.50 30.50 0.11 9.75 15 8 H 0.00 0.28 8.14 -2.39 -0.02 0.26 15 9 C -0.56 -31.77 8.84 25.60 0.23 -31.54 15 10 H 0.07 3.96 7.78 -2.91 -0.02 3.93 15 11 C 0.02 1.32 5.42 84.66 0.46 1.78 15 12 N -0.90 -54.85 12.95 21.45 0.28 -54.57 15 13 Si 0.97 43.47 29.54 68.60 2.03 45.50 15 14 H -0.27 -11.62 7.11 99.48 0.71 -10.91 15 15 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 16 H -0.26 -11.03 7.11 99.48 0.71 -10.32 15 17 O -0.39 -21.37 10.11 -126.22 -1.28 -22.65 15 18 H 0.07 1.67 8.14 -2.39 -0.02 1.65 15 19 H 0.07 1.70 6.41 -2.39 -0.02 1.69 15 20 H 0.05 1.55 7.73 -2.38 -0.02 1.53 15 21 H 0.05 1.93 8.14 -2.39 -0.02 1.91 15 22 H 0.07 2.68 8.14 -2.39 -0.02 2.66 15 23 H 0.09 2.71 6.41 -2.38 -0.02 2.69 15 24 H 0.07 2.40 8.14 -2.39 -0.02 2.38 15 25 H 0.05 1.81 8.14 -2.38 -0.02 1.79 15 26 H 0.11 4.19 8.14 -2.38 -0.02 4.17 15 27 H 0.07 2.87 8.04 -2.39 -0.02 2.85 15 28 H 0.26 15.12 8.31 -92.71 -0.77 14.35 15 Total: -1.00 -65.37 236.06 3.68 -61.69 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 1.12 Total: 8.91 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: 2.84 Total: -20.83 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.28 Total: -54.57 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -2.59 Total: -40.69 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -65.37 3.68 -61.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258582610.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.744 kcal (2) G-P(sol) polarization free energy of solvation -65.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds