Wall clock time and date at job start Mon Mar 30 2020 02:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.62843 * 59.60424 * 3 2 1 5 5 O 1.43369 * 109.62862 * 299.35951 * 3 2 1 6 6 C 1.44188 * 107.29182 * 239.45220 * 5 3 2 7 7 C 1.54914 * 103.07504 * 338.56700 * 6 5 3 8 8 H 1.09001 * 110.98186 * 277.45000 * 7 6 5 9 9 C 1.50705 * 111.01005 * 153.68480 * 7 6 5 10 10 H 1.08001 * 120.00035 * 6.19082 * 9 7 6 11 11 C 1.37880 * 119.99870 * 186.19463 * 9 7 6 12 12 N 1.31513 * 120.00010 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 119.99824 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.46940 * 89.99905 * 13 11 9 15 15 H 1.48500 * 109.47144 * 209.99857 * 13 11 9 16 16 H 1.48497 * 109.46922 * 329.99968 * 13 11 9 17 17 O 1.43753 * 109.63185 * 180.02562 * 3 2 1 18 18 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 20 20 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 21 21 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 22 22 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 23 23 H 1.09003 * 109.47012 * 60.00623 * 4 3 2 24 24 H 1.09001 * 109.46946 * 179.97438 * 4 3 2 25 25 H 1.08997 * 109.46901 * 300.00347 * 4 3 2 26 26 H 1.08997 * 110.69774 * 220.17223 * 6 5 3 27 27 H 1.09002 * 110.69541 * 96.96083 * 6 5 3 28 28 H 0.96996 * 120.00029 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5239 2.1702 1.2430 5 8 1.5763 2.1173 -1.1769 6 6 2.7403 2.5575 -1.9052 7 6 3.8445 2.5827 -0.8190 8 1 3.8049 3.5076 -0.2435 9 6 5.2083 2.3890 -1.4303 10 1 5.3192 2.3574 -2.5041 11 6 6.3145 2.2522 -0.6187 12 7 6.1795 2.2912 0.6889 13 14 8.0049 2.0115 -1.3764 14 1 8.6405 3.3350 -1.5992 15 1 8.8487 1.2053 -0.4581 16 1 7.8691 1.3028 -2.6743 17 8 3.4775 1.4466 -0.0006 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 0.5139 0.8900 21 1 1.8934 -0.5137 0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 1.8815 1.6599 2.1374 24 1 1.8890 3.1972 1.2406 25 1 0.4339 2.1716 1.2368 26 1 2.5827 3.5542 -2.3174 27 1 2.9921 1.8486 -2.6940 28 1 6.9577 2.1953 1.2599 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258582612.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:43 Heat of formation + Delta-G solvation = -104.183028 kcal Electronic energy + Delta-G solvation = -12094.665046 eV Core-core repulsion = 9917.472319 eV Total energy + Delta-G solvation = -2177.192727 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.32669 -34.05312 -33.58075 -32.29266 -29.07521 -27.70670 -24.72753 -23.71704 -21.13556 -19.40867 -16.84721 -15.94983 -15.29082 -14.60912 -14.19377 -13.92644 -13.17551 -12.98653 -12.26536 -12.08304 -11.64941 -11.54737 -11.35795 -11.06503 -10.93807 -10.83453 -10.59479 -10.36605 -10.07108 -9.28235 -8.88061 -8.66878 -8.23226 -6.12181 -4.26997 3.25983 3.32757 3.36244 4.33209 4.57138 4.97765 5.32543 5.48954 5.61719 5.81734 6.01062 6.06406 6.15167 6.18722 6.22674 6.34149 6.44981 6.50515 6.65891 6.71872 6.86087 7.00959 7.40988 7.77234 8.10296 8.48141 8.82923 9.44487 10.95818 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.066535 B = 0.011849 C = 0.011421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.727937 B = 2362.500252 C = 2450.985753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C 0.241 3.759 4 C -0.164 4.164 5 O -0.400 6.400 6 C 0.023 3.977 7 C 0.185 3.815 8 H 0.038 0.962 9 C -0.538 4.538 10 H 0.069 0.931 11 C 0.078 3.922 12 N -0.861 5.861 13 Si 0.899 3.101 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.271 1.271 17 O -0.351 6.351 18 H 0.048 0.952 19 H 0.059 0.941 20 H 0.053 0.947 21 H 0.070 0.930 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.856 -1.542 -0.808 7.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C 0.163 3.837 4 C -0.222 4.222 5 O -0.322 6.322 6 C -0.053 4.053 7 C 0.130 3.870 8 H 0.055 0.945 9 C -0.575 4.575 10 H 0.087 0.913 11 C -0.128 4.128 12 N -0.496 5.496 13 Si 0.725 3.275 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.196 1.196 17 O -0.272 6.272 18 H 0.067 0.933 19 H 0.078 0.922 20 H 0.072 0.928 21 H 0.089 0.911 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.837 -1.675 -0.567 7.062 hybrid contribution 1.004 -0.038 -0.302 1.050 sum -5.832 -1.713 -0.869 6.141 Atomic orbital electron populations 1.21719 0.95534 1.00752 1.02141 1.21727 0.95669 0.95856 1.02689 1.23148 0.83969 0.91061 0.85542 1.22337 1.00489 1.01375 0.97948 1.88677 1.31349 1.75787 1.36394 1.24310 0.85586 0.98759 0.96692 1.21399 0.93217 0.86730 0.85618 0.94480 1.20873 0.89640 1.53880 0.93085 0.91313 1.25083 0.99503 0.93499 0.94759 1.70036 1.30296 1.46298 1.02981 0.86504 0.83381 0.78302 0.79275 1.20352 1.20956 1.19596 1.89576 1.14556 1.50934 1.72134 0.93281 0.92189 0.92768 0.91142 0.91534 0.91567 0.92337 0.92233 0.90508 0.92005 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.41 37.16 0.35 -1.82 15 2 C -0.12 -2.26 5.60 -26.73 -0.15 -2.41 15 3 C 0.24 5.26 1.14 -26.73 -0.03 5.23 15 4 C -0.16 -3.16 8.83 37.16 0.33 -2.83 15 5 O -0.40 -8.78 10.22 -59.04 -0.60 -9.39 15 6 C 0.02 0.51 7.52 38.17 0.29 0.80 15 7 C 0.19 4.91 3.31 -26.87 -0.09 4.82 15 8 H 0.04 1.04 8.14 -51.93 -0.42 0.62 15 9 C -0.54 -15.09 8.85 -34.44 -0.30 -15.39 15 10 H 0.07 1.84 7.79 -52.49 -0.41 1.44 15 11 C 0.08 2.21 5.42 -17.82 -0.10 2.11 15 12 N -0.86 -25.46 12.96 55.43 0.72 -24.74 15 13 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 15 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 16 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 17 O -0.35 -9.42 10.29 -59.04 -0.61 -10.03 15 18 H 0.05 0.63 8.14 -51.93 -0.42 0.21 15 19 H 0.06 0.93 7.71 -51.93 -0.40 0.53 15 20 H 0.05 0.76 6.43 -51.93 -0.33 0.43 15 21 H 0.07 1.27 8.14 -51.93 -0.42 0.84 15 22 H 0.07 1.28 8.14 -51.93 -0.42 0.85 15 23 H 0.07 1.23 8.14 -51.93 -0.42 0.81 15 24 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 25 H 0.06 0.98 6.44 -51.93 -0.33 0.65 15 26 H 0.08 1.54 8.14 -51.93 -0.42 1.12 15 27 H 0.06 1.37 8.03 -51.93 -0.42 0.95 15 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 LS Contribution 236.11 15.07 3.56 3.56 Total: -1.00 -30.23 236.11 -5.65 -35.88 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -3.99 Total: -1.91 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 0.29 Total: -9.50 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 0.72 Total: -24.74 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -1.21 Total: -19.42 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -30.23 -5.65 -35.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258582612.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.304 kcal (2) G-P(sol) polarization free energy of solvation -30.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds