Wall clock time and date at job start Mon Mar 30 2020 02:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.62843 * 59.60424 * 3 2 1 5 5 O 1.43369 * 109.62862 * 299.35951 * 3 2 1 6 6 C 1.44188 * 107.29182 * 239.45220 * 5 3 2 7 7 C 1.54914 * 103.07504 * 338.56700 * 6 5 3 8 8 H 1.09001 * 110.98186 * 277.45000 * 7 6 5 9 9 C 1.50705 * 111.01005 * 153.68480 * 7 6 5 10 10 H 1.08001 * 120.00035 * 6.19082 * 9 7 6 11 11 C 1.37880 * 119.99870 * 186.19463 * 9 7 6 12 12 N 1.31513 * 120.00010 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 119.99824 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.46940 * 89.99905 * 13 11 9 15 15 H 1.48500 * 109.47144 * 209.99857 * 13 11 9 16 16 H 1.48497 * 109.46922 * 329.99968 * 13 11 9 17 17 O 1.43753 * 109.63185 * 180.02562 * 3 2 1 18 18 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 20 20 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 21 21 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 22 22 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 23 23 H 1.09003 * 109.47012 * 60.00623 * 4 3 2 24 24 H 1.09001 * 109.46946 * 179.97438 * 4 3 2 25 25 H 1.08997 * 109.46901 * 300.00347 * 4 3 2 26 26 H 1.08997 * 110.69774 * 220.17223 * 6 5 3 27 27 H 1.09002 * 110.69541 * 96.96083 * 6 5 3 28 28 H 0.96996 * 120.00029 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5239 2.1702 1.2430 5 8 1.5763 2.1173 -1.1769 6 6 2.7403 2.5575 -1.9052 7 6 3.8445 2.5827 -0.8190 8 1 3.8049 3.5076 -0.2435 9 6 5.2083 2.3890 -1.4303 10 1 5.3192 2.3574 -2.5041 11 6 6.3145 2.2522 -0.6187 12 7 6.1795 2.2912 0.6889 13 14 8.0049 2.0115 -1.3764 14 1 8.6405 3.3350 -1.5992 15 1 8.8487 1.2053 -0.4581 16 1 7.8691 1.3028 -2.6743 17 8 3.4775 1.4466 -0.0006 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 0.5139 0.8900 21 1 1.8934 -0.5137 0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 1.8815 1.6599 2.1374 24 1 1.8890 3.1972 1.2406 25 1 0.4339 2.1716 1.2368 26 1 2.5827 3.5542 -2.3174 27 1 2.9921 1.8486 -2.6940 28 1 6.9577 2.1953 1.2599 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258582612.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:43 Heat of formation + Delta-G solvation = -124.022922 kcal Electronic energy + Delta-G solvation = -12095.525369 eV Core-core repulsion = 9917.472319 eV Total energy + Delta-G solvation = -2178.053049 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.13308 -35.91646 -35.26897 -34.28640 -30.82077 -29.43980 -26.73155 -25.17462 -23.10271 -21.06304 -18.91821 -17.80456 -17.09832 -16.53355 -15.82734 -15.64070 -14.86932 -14.64183 -14.16780 -13.82730 -13.24097 -13.13065 -12.99117 -12.83137 -12.72333 -12.37661 -12.34157 -12.12012 -11.76357 -11.21104 -10.86608 -10.59749 -10.14327 -8.24546 -6.47592 1.40876 1.42764 1.53951 2.36419 2.78245 3.05980 3.52239 3.99610 4.04333 4.22387 4.37946 4.44205 4.56598 4.61612 4.68125 4.75369 4.99647 5.01592 5.08161 5.15564 5.36188 5.40624 5.46270 5.62506 6.02232 6.52071 6.78372 7.28920 8.84549 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.066535 B = 0.011849 C = 0.011421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.727937 B = 2362.500252 C = 2450.985753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.120 4.120 3 C 0.225 3.775 4 C -0.159 4.159 5 O -0.398 6.398 6 C 0.033 3.967 7 C 0.177 3.823 8 H 0.009 0.991 9 C -0.560 4.560 10 H 0.076 0.924 11 C 0.023 3.977 12 N -0.901 5.901 13 Si 0.972 3.028 14 H -0.266 1.266 15 H -0.282 1.282 16 H -0.263 1.263 17 O -0.386 6.386 18 H 0.075 0.925 19 H 0.054 0.946 20 H 0.067 0.933 21 H 0.073 0.927 22 H 0.054 0.946 23 H 0.069 0.931 24 H 0.040 0.960 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.065 0.935 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.377 -2.058 -1.426 7.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.158 4.158 3 C 0.147 3.853 4 C -0.216 4.216 5 O -0.320 6.320 6 C -0.043 4.043 7 C 0.122 3.878 8 H 0.027 0.973 9 C -0.597 4.597 10 H 0.094 0.906 11 C -0.180 4.180 12 N -0.537 5.537 13 Si 0.796 3.204 14 H -0.191 1.191 15 H -0.208 1.208 16 H -0.187 1.187 17 O -0.307 6.307 18 H 0.094 0.906 19 H 0.073 0.927 20 H 0.085 0.915 21 H 0.092 0.908 22 H 0.073 0.927 23 H 0.088 0.912 24 H 0.059 0.941 25 H 0.110 0.890 26 H 0.119 0.881 27 H 0.083 0.917 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.378 -2.186 -1.195 7.788 hybrid contribution 1.099 0.125 -0.083 1.110 sum -6.279 -2.062 -1.278 6.731 Atomic orbital electron populations 1.21673 0.92389 1.02694 1.02487 1.21753 0.98303 0.93402 1.02324 1.23658 0.81929 0.93425 0.86244 1.22304 1.02438 0.99959 0.96898 1.88654 1.30856 1.75937 1.36533 1.24207 0.84372 1.00242 0.95518 1.21298 0.94325 0.85686 0.86490 0.97337 1.21297 0.90896 1.53880 0.93661 0.90635 1.26029 1.03842 0.92949 0.95138 1.70173 1.31546 1.47470 1.04515 0.85357 0.77948 0.78666 0.78450 1.19111 1.20777 1.18692 1.89498 1.17840 1.50778 1.72571 0.90637 0.92708 0.91457 0.90804 0.92688 0.91204 0.94074 0.88993 0.88094 0.91721 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.41 71.98 0.68 -2.99 15 2 C -0.12 -4.29 5.60 30.60 0.17 -4.12 15 3 C 0.22 9.67 1.14 30.60 0.04 9.71 15 4 C -0.16 -5.96 8.83 71.98 0.64 -5.33 15 5 O -0.40 -17.03 10.22 -126.22 -1.29 -18.32 15 6 C 0.03 1.46 7.52 72.64 0.55 2.00 15 7 C 0.18 9.55 3.31 30.50 0.10 9.65 15 8 H 0.01 0.52 8.14 -2.39 -0.02 0.50 15 9 C -0.56 -31.71 8.85 25.60 0.23 -31.49 15 10 H 0.08 4.03 7.79 -2.91 -0.02 4.01 15 11 C 0.02 1.32 5.42 84.66 0.46 1.78 15 12 N -0.90 -54.25 12.96 21.45 0.28 -53.97 15 13 Si 0.97 43.41 29.54 68.60 2.03 45.44 15 14 H -0.27 -11.30 7.11 99.48 0.71 -10.59 15 15 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 16 H -0.26 -11.26 7.11 99.48 0.71 -10.55 15 17 O -0.39 -21.00 10.29 -126.22 -1.30 -22.30 15 18 H 0.07 1.67 8.14 -2.39 -0.02 1.65 15 19 H 0.05 1.55 7.71 -2.39 -0.02 1.53 15 20 H 0.07 1.65 6.43 -2.38 -0.02 1.63 15 21 H 0.07 2.56 8.14 -2.39 -0.02 2.54 15 22 H 0.05 2.06 8.14 -2.39 -0.02 2.04 15 23 H 0.07 2.54 8.14 -2.39 -0.02 2.52 15 24 H 0.04 1.65 8.14 -2.39 -0.02 1.63 15 25 H 0.09 2.81 6.44 -2.39 -0.02 2.80 15 26 H 0.10 3.93 8.14 -2.39 -0.02 3.91 15 27 H 0.06 2.81 8.03 -2.39 -0.02 2.79 15 28 H 0.27 14.98 8.31 -92.71 -0.77 14.21 15 Total: -1.00 -64.72 236.11 3.69 -61.03 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 1.12 Total: 8.92 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 2.85 Total: -20.79 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.28 Total: -53.97 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -2.59 Total: -40.62 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -64.72 3.69 -61.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258582612.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.996 kcal (2) G-P(sol) polarization free energy of solvation -64.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds