Wall clock time and date at job start Mon Mar 30 2020 02:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.53006 * 109.62353 * 305.69828 * 3 2 1 5 5 O 1.43360 * 109.63241 * 66.08802 * 3 2 1 6 6 C 1.44195 * 107.29072 * 120.40116 * 5 3 2 7 7 C 1.54923 * 103.07323 * 21.43985 * 6 5 3 8 8 H 1.08988 * 110.97729 * 82.58139 * 7 6 5 9 9 C 1.50696 * 110.97392 * 206.33388 * 7 6 5 10 10 H 1.07998 * 120.00811 * 359.97438 * 9 7 6 11 11 C 1.37881 * 119.99623 * 180.02562 * 9 7 6 12 12 N 1.31512 * 120.00192 * 179.97438 * 11 9 7 13 13 Si 1.86798 * 119.99929 * 359.97438 * 11 9 7 14 14 H 1.48495 * 109.47116 * 90.00608 * 13 11 9 15 15 H 1.48504 * 109.47023 * 210.00247 * 13 11 9 16 16 H 1.48498 * 109.47183 * 330.00317 * 13 11 9 17 17 O 1.43750 * 109.51241 * 185.38222 * 3 2 1 18 18 H 1.08998 * 109.47476 * 300.00687 * 1 2 3 19 19 H 1.09008 * 109.46849 * 60.00177 * 1 2 3 20 20 H 1.09001 * 109.47104 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47209 * 239.99772 * 2 1 3 22 22 H 1.08999 * 109.47085 * 119.99312 * 2 1 3 23 23 H 1.09001 * 109.47002 * 179.68885 * 4 3 2 24 24 H 1.08993 * 109.46955 * 299.69322 * 4 3 2 25 25 H 1.09000 * 109.47050 * 59.69151 * 4 3 2 26 26 H 1.09001 * 110.69556 * 139.83337 * 6 5 3 27 27 H 1.09002 * 110.69910 * 262.87346 * 6 5 3 28 28 H 0.97000 * 120.00752 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4185 2.2073 -1.1704 5 8 1.6846 2.0791 1.2344 6 6 2.9101 2.4945 1.8707 7 6 3.9141 2.5542 0.6924 8 1 3.8275 3.4974 0.1533 9 6 5.3254 2.3392 1.1749 10 1 5.5180 2.1728 2.2244 11 6 6.3712 2.3559 0.2764 12 7 7.6029 2.1688 0.6974 13 14 6.0383 2.6443 -1.5389 14 1 6.0938 4.1000 -1.8272 15 1 7.0649 1.9399 -2.3485 16 1 4.6917 2.1223 -1.8843 17 8 3.4719 1.4455 -0.1271 18 1 -0.3634 0.5139 0.8899 19 1 -0.3633 0.5139 -0.8901 20 1 -0.3633 -1.0277 0.0005 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5137 0.8900 23 1 1.7792 3.2359 -1.1648 24 1 1.7005 1.7285 -2.1080 25 1 0.3330 2.2025 -1.0721 26 1 2.7931 3.4774 2.3272 27 1 3.2264 1.7617 2.6130 28 1 8.3386 2.1802 0.0653 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258582613.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:44 Heat of formation + Delta-G solvation = -99.505390 kcal Electronic energy + Delta-G solvation = -12166.065833 eV Core-core repulsion = 9989.075943 eV Total energy + Delta-G solvation = -2176.989889 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.61581 -34.28244 -33.84217 -32.43493 -29.39301 -27.99812 -24.88909 -23.95514 -21.00971 -19.58949 -17.21093 -16.16196 -15.65785 -14.63473 -14.37993 -13.86002 -13.45398 -13.05964 -12.67842 -12.34978 -11.82330 -11.72797 -11.62154 -11.36305 -11.12643 -10.88549 -10.56160 -10.19406 -9.79692 -9.64566 -9.03335 -8.70939 -8.55850 -6.22969 -4.33887 3.29328 3.36456 3.57216 4.33573 4.41239 4.74847 5.23045 5.32176 5.42284 5.62736 5.82711 5.84642 5.93889 5.95642 6.05757 6.17383 6.26503 6.33880 6.42890 6.46627 6.66177 6.76043 7.04096 7.50633 8.17594 8.28400 8.76630 9.38494 10.87068 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.054897 B = 0.014564 C = 0.013158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.926545 B = 1922.066471 C = 2127.464831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.243 3.757 4 C -0.169 4.169 5 O -0.397 6.397 6 C 0.035 3.965 7 C 0.146 3.854 8 H 0.039 0.961 9 C -0.524 4.524 10 H 0.083 0.917 11 C 0.087 3.913 12 N -0.884 5.884 13 Si 0.871 3.129 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.234 1.234 17 O -0.374 6.374 18 H 0.059 0.941 19 H 0.054 0.946 20 H 0.050 0.950 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.121 -0.957 -2.929 11.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C 0.166 3.834 4 C -0.226 4.226 5 O -0.318 6.318 6 C -0.041 4.041 7 C 0.091 3.909 8 H 0.057 0.943 9 C -0.561 4.561 10 H 0.101 0.899 11 C -0.118 4.118 12 N -0.521 5.521 13 Si 0.697 3.303 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.157 1.157 17 O -0.296 6.296 18 H 0.078 0.922 19 H 0.073 0.927 20 H 0.069 0.931 21 H 0.090 0.910 22 H 0.088 0.912 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.017 -1.094 -3.028 11.478 hybrid contribution 0.175 0.238 -0.876 0.925 sum -10.842 -0.856 -3.904 11.556 Atomic orbital electron populations 1.21756 0.95370 1.01038 1.02154 1.21754 0.95841 0.95539 1.02972 1.23126 0.83986 0.91780 0.84545 1.22401 1.00956 1.00995 0.98275 1.88702 1.30627 1.77905 1.34608 1.24118 0.83190 0.99680 0.97107 1.21855 0.95601 0.86968 0.86444 0.94318 1.20772 0.86688 1.52213 0.96388 0.89862 1.25032 0.94665 0.92557 0.99592 1.69898 0.99148 1.47288 1.35759 0.86914 0.80569 0.78245 0.84572 1.20639 1.21281 1.15680 1.89586 1.15966 1.53819 1.70248 0.92152 0.92658 0.93063 0.91000 0.91183 0.92390 0.91532 0.91551 0.89955 0.91318 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.31 37.15 0.35 -1.66 15 2 C -0.12 -2.12 5.62 -26.73 -0.15 -2.27 15 3 C 0.24 4.89 1.15 -26.73 -0.03 4.85 15 4 C -0.17 -2.92 8.70 37.16 0.32 -2.59 15 5 O -0.40 -8.14 10.46 -59.04 -0.62 -8.75 15 6 C 0.04 0.75 7.51 38.17 0.29 1.04 15 7 C 0.15 3.59 2.63 -26.87 -0.07 3.52 15 8 H 0.04 0.94 7.42 -51.94 -0.39 0.56 15 9 C -0.52 -14.86 9.41 -34.44 -0.32 -15.19 15 10 H 0.08 2.49 8.01 -52.49 -0.42 2.07 15 11 C 0.09 2.53 5.47 -17.82 -0.10 2.43 15 12 N -0.88 -26.79 13.96 55.43 0.77 -26.02 15 13 Si 0.87 21.75 27.08 -169.99 -4.60 17.15 15 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 15 16 H -0.23 -5.75 5.72 56.52 0.32 -5.42 15 17 O -0.37 -9.11 8.45 -59.04 -0.50 -9.61 15 18 H 0.06 0.86 7.86 -51.93 -0.41 0.45 15 19 H 0.05 0.70 6.34 -51.92 -0.33 0.37 15 20 H 0.05 0.60 8.14 -51.93 -0.42 0.18 15 21 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15 22 H 0.07 1.25 8.14 -51.93 -0.42 0.82 15 23 H 0.06 1.03 8.14 -51.93 -0.42 0.60 15 24 H 0.07 1.09 8.14 -51.93 -0.42 0.67 15 25 H 0.07 0.98 6.34 -51.93 -0.33 0.65 15 26 H 0.08 1.56 8.14 -51.93 -0.42 1.13 15 27 H 0.07 1.47 8.01 -51.93 -0.42 1.06 15 28 H 0.27 7.58 8.31 -40.82 -0.34 7.24 15 LS Contribution 230.81 15.07 3.48 3.48 Total: -1.00 -30.38 230.81 -5.22 -35.60 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -4.04 Total: -1.97 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 0.28 Total: -9.88 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: 0.77 Total: -26.02 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -1.12 Total: -18.37 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.60 Total: 17.15 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -30.38 -5.22 -35.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258582613.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.905 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds