Wall clock time and date at job start Mon Mar 30 2020 02:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.53006 * 109.62353 * 305.69828 * 3 2 1 5 5 O 1.43360 * 109.63241 * 66.08802 * 3 2 1 6 6 C 1.44195 * 107.29072 * 120.40116 * 5 3 2 7 7 C 1.54923 * 103.07323 * 21.43985 * 6 5 3 8 8 H 1.08988 * 110.97729 * 82.58139 * 7 6 5 9 9 C 1.50696 * 110.97392 * 206.33388 * 7 6 5 10 10 H 1.07998 * 120.00811 * 359.97438 * 9 7 6 11 11 C 1.37881 * 119.99623 * 180.02562 * 9 7 6 12 12 N 1.31512 * 120.00192 * 179.97438 * 11 9 7 13 13 Si 1.86798 * 119.99929 * 359.97438 * 11 9 7 14 14 H 1.48495 * 109.47116 * 90.00608 * 13 11 9 15 15 H 1.48504 * 109.47023 * 210.00247 * 13 11 9 16 16 H 1.48498 * 109.47183 * 330.00317 * 13 11 9 17 17 O 1.43750 * 109.51241 * 185.38222 * 3 2 1 18 18 H 1.08998 * 109.47476 * 300.00687 * 1 2 3 19 19 H 1.09008 * 109.46849 * 60.00177 * 1 2 3 20 20 H 1.09001 * 109.47104 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47209 * 239.99772 * 2 1 3 22 22 H 1.08999 * 109.47085 * 119.99312 * 2 1 3 23 23 H 1.09001 * 109.47002 * 179.68885 * 4 3 2 24 24 H 1.08993 * 109.46955 * 299.69322 * 4 3 2 25 25 H 1.09000 * 109.47050 * 59.69151 * 4 3 2 26 26 H 1.09001 * 110.69556 * 139.83337 * 6 5 3 27 27 H 1.09002 * 110.69910 * 262.87346 * 6 5 3 28 28 H 0.97000 * 120.00752 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4185 2.2073 -1.1704 5 8 1.6846 2.0791 1.2344 6 6 2.9101 2.4945 1.8707 7 6 3.9141 2.5542 0.6924 8 1 3.8275 3.4974 0.1533 9 6 5.3254 2.3392 1.1749 10 1 5.5180 2.1728 2.2244 11 6 6.3712 2.3559 0.2764 12 7 7.6029 2.1688 0.6974 13 14 6.0383 2.6443 -1.5389 14 1 6.0938 4.1000 -1.8272 15 1 7.0649 1.9399 -2.3485 16 1 4.6917 2.1223 -1.8843 17 8 3.4719 1.4455 -0.1271 18 1 -0.3634 0.5139 0.8899 19 1 -0.3633 0.5139 -0.8901 20 1 -0.3633 -1.0277 0.0005 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5137 0.8900 23 1 1.7792 3.2359 -1.1648 24 1 1.7005 1.7285 -2.1080 25 1 0.3330 2.2025 -1.0721 26 1 2.7931 3.4774 2.3272 27 1 3.2264 1.7617 2.6130 28 1 8.3386 2.1802 0.0653 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258582613.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:44 Heat of formation + Delta-G solvation = -119.999511 kcal Electronic energy + Delta-G solvation = -12166.954524 eV Core-core repulsion = 9989.075943 eV Total energy + Delta-G solvation = -2177.878581 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.29355 -36.03611 -35.38487 -34.47438 -31.10200 -29.51169 -26.83487 -25.27450 -22.90079 -21.11116 -19.30224 -17.91721 -17.34218 -16.47208 -15.87703 -15.53959 -15.10250 -14.72565 -14.53049 -13.97843 -13.36979 -13.25406 -13.01898 -12.88580 -12.76882 -12.45072 -12.17897 -11.86552 -11.76720 -11.47003 -10.88753 -10.77938 -10.26029 -8.43920 -6.60056 1.32396 1.35832 1.60112 2.33943 2.63267 2.94701 3.41569 3.95333 3.97051 4.07722 4.25088 4.40269 4.47340 4.59937 4.64594 4.72198 4.89610 5.00167 5.07012 5.10826 5.19962 5.32724 5.43120 5.51683 6.06872 6.42519 6.55416 7.16211 8.69719 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.054897 B = 0.014564 C = 0.013158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.926545 B = 1922.066471 C = 2127.464831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.125 4.125 3 C 0.227 3.773 4 C -0.165 4.165 5 O -0.394 6.394 6 C 0.041 3.959 7 C 0.146 3.854 8 H 0.046 0.954 9 C -0.536 4.536 10 H 0.049 0.951 11 C 0.033 3.967 12 N -0.929 5.929 13 Si 0.936 3.064 14 H -0.266 1.266 15 H -0.285 1.285 16 H -0.226 1.226 17 O -0.399 6.399 18 H 0.053 0.947 19 H 0.071 0.929 20 H 0.072 0.928 21 H 0.078 0.922 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.076 0.924 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.059 0.941 28 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.203 -0.786 -4.439 13.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.163 4.163 3 C 0.150 3.850 4 C -0.223 4.223 5 O -0.316 6.316 6 C -0.035 4.035 7 C 0.091 3.909 8 H 0.064 0.936 9 C -0.573 4.573 10 H 0.068 0.932 11 C -0.168 4.168 12 N -0.568 5.568 13 Si 0.758 3.242 14 H -0.192 1.192 15 H -0.211 1.211 16 H -0.149 1.149 17 O -0.322 6.322 18 H 0.072 0.928 19 H 0.090 0.910 20 H 0.091 0.909 21 H 0.096 0.904 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.095 0.905 25 H 0.113 0.887 26 H 0.126 0.874 27 H 0.077 0.923 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.120 -0.922 -4.528 13.910 hybrid contribution 0.790 0.135 -0.325 0.865 sum -12.330 -0.787 -4.853 13.274 Atomic orbital electron populations 1.21713 0.92416 1.02747 1.02608 1.21812 0.98349 0.93526 1.02572 1.23688 0.82049 0.94037 0.85245 1.22398 1.02533 1.00133 0.97219 1.88695 1.29822 1.78039 1.34997 1.24020 0.82736 1.00831 0.95928 1.21689 0.94144 0.87189 0.87900 0.93620 1.20994 0.89298 1.51849 0.95146 0.93239 1.25913 0.94319 0.92325 1.04287 1.70015 1.00215 1.49085 1.37457 0.85915 0.80563 0.78828 0.78872 1.19156 1.21118 1.14882 1.89489 1.18947 1.53533 1.70192 0.92755 0.91037 0.90861 0.90378 0.92735 0.93026 0.90533 0.88736 0.87443 0.92320 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.31 71.98 0.67 -2.63 15 2 C -0.12 -3.99 5.62 30.59 0.17 -3.82 15 3 C 0.23 8.57 1.15 30.60 0.04 8.61 15 4 C -0.17 -5.13 8.70 71.98 0.63 -4.51 15 5 O -0.39 -15.33 10.46 -126.22 -1.32 -16.65 15 6 C 0.04 1.71 7.51 72.64 0.55 2.25 15 7 C 0.15 7.06 2.63 30.50 0.08 7.14 15 8 H 0.05 2.15 7.42 -2.39 -0.02 2.13 15 9 C -0.54 -30.96 9.41 25.60 0.24 -30.72 15 10 H 0.05 3.09 8.01 -2.91 -0.02 3.07 15 11 C 0.03 1.91 5.47 84.66 0.46 2.38 15 12 N -0.93 -57.52 13.96 21.45 0.30 -57.22 15 13 Si 0.94 44.69 27.08 68.60 1.86 46.55 15 14 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 15 H -0.29 -13.43 7.11 99.48 0.71 -12.72 15 16 H -0.23 -10.44 5.72 99.48 0.57 -9.87 15 17 O -0.40 -18.91 8.45 -126.22 -1.07 -19.97 15 18 H 0.05 1.37 7.86 -2.39 -0.02 1.35 15 19 H 0.07 1.49 6.34 -2.38 -0.02 1.47 15 20 H 0.07 1.45 8.14 -2.39 -0.02 1.43 15 21 H 0.08 2.38 8.14 -2.39 -0.02 2.36 15 22 H 0.05 1.88 8.14 -2.39 -0.02 1.86 15 23 H 0.05 1.66 8.14 -2.39 -0.02 1.64 15 24 H 0.08 2.22 8.14 -2.39 -0.02 2.20 15 25 H 0.09 2.38 6.34 -2.39 -0.02 2.36 15 26 H 0.11 3.89 8.14 -2.39 -0.02 3.87 15 27 H 0.06 2.53 8.01 -2.39 -0.02 2.51 15 28 H 0.27 15.65 8.31 -92.71 -0.77 14.88 15 Total: -1.00 -64.97 230.81 3.59 -61.38 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 0.99 Total: 7.22 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: 2.83 Total: -21.29 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.30 Total: -57.22 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -2.39 Total: -36.63 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.86 Total: 46.55 kcal Total: -64.97 3.59 -61.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258582613.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.620 kcal (2) G-P(sol) polarization free energy of solvation -64.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds