Wall clock time and date at job start Mon Mar 30 2020 02:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46610 * 2 1 4 4 C 1.53001 * 109.62944 * 305.39533 * 3 2 1 5 5 O 1.43755 * 109.63065 * 65.63801 * 3 2 1 6 6 C 1.44779 * 104.81666 * 144.18954 * 5 3 2 7 7 C 1.54912 * 101.72261 * 323.89653 * 6 5 3 8 8 H 1.09001 * 110.84632 * 277.09839 * 7 6 5 9 9 C 1.50700 * 110.69748 * 153.95593 * 7 6 5 10 10 H 1.07999 * 119.99988 * 4.88920 * 9 7 6 11 11 C 1.37885 * 120.00047 * 184.89099 * 9 7 6 12 12 N 1.31518 * 119.99792 * 359.72305 * 11 9 7 13 13 Si 1.86795 * 120.00009 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47163 * 59.99902 * 13 11 9 15 15 H 1.48495 * 109.47159 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47290 * 299.99897 * 13 11 9 17 17 O 1.43365 * 109.63027 * 185.00101 * 3 2 1 18 18 H 1.09000 * 109.47377 * 299.99611 * 1 2 3 19 19 H 1.08997 * 109.47283 * 60.00312 * 1 2 3 20 20 H 1.09008 * 109.46553 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47377 * 240.00389 * 2 1 3 22 22 H 1.08997 * 109.47283 * 119.99688 * 2 1 3 23 23 H 1.08996 * 109.46985 * 300.30684 * 4 3 2 24 24 H 1.08997 * 109.47023 * 60.30901 * 4 3 2 25 25 H 1.08994 * 109.47228 * 180.30653 * 4 3 2 26 26 H 1.08996 * 110.97766 * 205.78737 * 6 5 3 27 27 H 1.09007 * 110.97660 * 82.00084 * 6 5 3 28 28 H 0.97000 * 119.99468 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.4242 2.2054 -1.1747 5 8 1.6743 2.0841 1.2334 6 6 2.7881 2.9562 1.5415 7 6 3.9921 2.1152 1.0489 8 1 4.2935 1.3896 1.8044 9 6 5.1488 3.0072 0.6783 10 1 5.0868 4.0715 0.8505 11 6 6.2865 2.4644 0.1194 12 7 6.3642 1.1676 -0.0853 13 14 7.7206 3.5700 -0.3392 14 1 8.2152 4.2683 0.8745 15 1 8.8141 2.7481 -0.9169 16 1 7.2729 4.5724 -1.3391 17 8 3.4687 1.4484 -0.1177 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0278 -0.0005 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 1.7020 1.7186 -2.1096 24 1 0.3387 2.2100 -1.0760 25 1 1.7933 3.2309 -1.1755 26 1 2.8539 3.1412 2.6137 27 1 2.7145 3.8931 0.9892 28 1 7.1644 0.7859 -0.4788 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258582615.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:45 Heat of formation + Delta-G solvation = -123.180868 kcal Electronic energy + Delta-G solvation = -12101.048829 eV Core-core repulsion = 9923.032293 eV Total energy + Delta-G solvation = -2178.016535 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.12803 -35.91544 -35.28167 -34.26701 -30.78491 -29.41764 -26.74566 -25.10685 -23.10433 -21.13678 -18.85213 -17.71406 -17.16336 -16.67548 -16.00653 -15.44024 -14.67002 -14.46092 -14.18499 -13.79063 -13.55241 -13.08426 -12.94326 -12.77191 -12.60816 -12.50457 -12.33025 -12.07414 -11.85290 -11.21564 -10.84125 -10.65392 -10.01765 -8.21667 -6.45309 1.41267 1.44463 1.52446 2.37693 2.80234 3.07920 3.53183 4.00220 4.02570 4.24197 4.34002 4.40570 4.60214 4.62272 4.65016 4.80479 4.98914 5.02517 5.08303 5.15017 5.33579 5.43316 5.47167 5.63876 6.04630 6.53857 6.85858 7.31664 8.86947 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.068203 B = 0.011941 C = 0.011385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.439854 B = 2344.292435 C = 2458.893099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C 0.226 3.774 4 C -0.159 4.159 5 O -0.394 6.394 6 C 0.031 3.969 7 C 0.178 3.822 8 H 0.005 0.995 9 C -0.563 4.563 10 H 0.075 0.925 11 C 0.023 3.977 12 N -0.902 5.902 13 Si 0.971 3.029 14 H -0.261 1.261 15 H -0.283 1.283 16 H -0.268 1.268 17 O -0.392 6.392 18 H 0.054 0.946 19 H 0.070 0.930 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.049 0.951 23 H 0.069 0.931 24 H 0.093 0.907 25 H 0.047 0.953 26 H 0.110 0.890 27 H 0.069 0.931 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.157 1.251 -0.543 8.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C 0.149 3.851 4 C -0.216 4.216 5 O -0.315 6.315 6 C -0.045 4.045 7 C 0.122 3.878 8 H 0.023 0.977 9 C -0.600 4.600 10 H 0.093 0.907 11 C -0.179 4.179 12 N -0.539 5.539 13 Si 0.794 3.206 14 H -0.186 1.186 15 H -0.208 1.208 16 H -0.193 1.193 17 O -0.314 6.314 18 H 0.073 0.927 19 H 0.089 0.911 20 H 0.092 0.908 21 H 0.092 0.908 22 H 0.068 0.932 23 H 0.088 0.912 24 H 0.111 0.889 25 H 0.066 0.934 26 H 0.128 0.872 27 H 0.087 0.913 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.140 0.976 -0.649 8.223 hybrid contribution 1.057 0.313 -0.140 1.111 sum -7.083 1.288 -0.789 7.242 Atomic orbital electron populations 1.21717 0.92391 1.02718 1.02558 1.21792 0.98348 0.93746 1.02083 1.23676 0.82838 0.93478 0.85133 1.22320 1.01821 0.99990 0.97507 1.89014 1.41945 1.58973 1.41608 1.24388 0.84182 0.93836 1.02068 1.21152 0.92334 0.89946 0.84319 0.97698 1.21380 0.99265 0.94325 1.44988 0.90716 1.26028 1.01410 0.96421 0.94090 1.70183 1.29009 1.12692 1.41991 0.85441 0.77674 0.78429 0.79046 1.18557 1.20798 1.19256 1.89153 1.16857 1.80057 1.45300 0.92693 0.91107 0.90840 0.90814 0.93181 0.91236 0.88854 0.93406 0.87238 0.91328 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.32 71.98 0.67 -3.06 15 2 C -0.12 -4.47 5.62 30.60 0.17 -4.29 15 3 C 0.23 9.68 1.15 30.60 0.04 9.71 15 4 C -0.16 -5.71 8.68 71.98 0.62 -5.09 15 5 O -0.39 -16.80 10.57 -126.22 -1.33 -18.13 15 6 C 0.03 1.37 7.33 72.64 0.53 1.90 15 7 C 0.18 9.63 3.51 30.50 0.11 9.74 15 8 H 0.01 0.32 8.14 -2.39 -0.02 0.30 15 9 C -0.56 -31.77 8.83 25.60 0.23 -31.55 15 10 H 0.07 3.96 7.78 -2.91 -0.02 3.93 15 11 C 0.02 1.32 5.42 84.66 0.46 1.78 15 12 N -0.90 -54.85 12.95 21.45 0.28 -54.57 15 13 Si 0.97 43.47 29.54 68.60 2.03 45.50 15 14 H -0.26 -11.04 7.11 99.48 0.71 -10.34 15 15 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 16 H -0.27 -11.60 7.11 99.48 0.71 -10.90 15 17 O -0.39 -21.38 10.12 -126.22 -1.28 -22.65 15 18 H 0.05 1.54 7.85 -2.39 -0.02 1.53 15 19 H 0.07 1.71 6.36 -2.39 -0.02 1.69 15 20 H 0.07 1.66 8.14 -2.38 -0.02 1.64 15 21 H 0.07 2.66 8.14 -2.39 -0.02 2.64 15 22 H 0.05 1.96 8.14 -2.39 -0.02 1.94 15 23 H 0.07 2.40 8.14 -2.39 -0.02 2.38 15 24 H 0.09 2.73 6.38 -2.39 -0.02 2.71 15 25 H 0.05 1.80 8.14 -2.39 -0.02 1.78 15 26 H 0.11 4.19 8.14 -2.39 -0.02 4.17 15 27 H 0.07 2.88 8.04 -2.38 -0.02 2.86 15 28 H 0.26 15.12 8.31 -92.71 -0.77 14.34 15 Total: -1.00 -65.40 236.07 3.64 -61.75 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 1.12 Total: 8.97 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: 2.83 Total: -20.86 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.28 Total: -54.57 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -2.61 Total: -40.79 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -65.40 3.64 -61.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258582615.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.427 kcal (2) G-P(sol) polarization free energy of solvation -65.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds