Wall clock time and date at job start Mon Mar 30 2020 02:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47027 * 2 1 4 4 C 1.53002 * 109.46671 * 179.97438 * 3 2 1 5 5 H 1.08995 * 110.14453 * 53.37697 * 4 3 2 6 6 O 1.44379 * 110.11662 * 291.74366 * 4 3 2 7 7 C 1.44836 * 103.23325 * 201.60230 * 6 4 3 8 8 C 1.54445 * 102.89940 * 36.61349 * 7 6 4 9 9 H 1.09004 * 110.32274 * 97.10275 * 8 7 6 10 10 C 1.50696 * 110.32419 * 219.30049 * 8 7 6 11 11 H 1.08004 * 119.99873 * 357.11245 * 10 8 7 12 12 C 1.37879 * 120.00461 * 177.10880 * 10 8 7 13 13 N 1.31519 * 119.99771 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 120.00022 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47450 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47216 * 120.00256 * 14 12 10 17 17 H 1.48505 * 109.47082 * 240.00089 * 14 12 10 18 18 O 1.43784 * 110.11003 * 175.00062 * 4 3 2 19 19 H 1.09005 * 109.46898 * 299.99340 * 1 2 3 20 20 H 1.09000 * 109.46893 * 59.99552 * 1 2 3 21 21 H 1.08998 * 109.47094 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46668 * 240.00054 * 2 1 3 23 23 H 1.09000 * 109.46893 * 120.00448 * 2 1 3 24 24 H 1.09005 * 109.46743 * 60.00565 * 3 2 1 25 25 H 1.08993 * 109.47242 * 299.99972 * 3 2 1 26 26 H 1.09002 * 110.73130 * 278.26050 * 7 6 4 27 27 H 1.09002 * 110.72939 * 154.96896 * 7 6 4 28 28 H 0.96998 * 119.99613 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9457 0.8318 -0.8204 6 8 4.0660 0.9403 1.2602 7 6 5.4110 1.4741 1.3234 8 6 5.2580 2.8709 0.6825 9 1 5.1436 3.6314 1.4550 10 6 6.4494 3.1814 -0.1866 11 1 7.2704 2.4823 -0.2472 12 6 6.4913 4.3578 -0.9044 13 7 5.4918 5.2093 -0.8303 14 14 7.9678 4.7422 -1.9821 15 1 8.9492 3.6313 -1.8920 16 1 7.5250 4.8991 -3.3908 17 1 8.6035 6.0022 -1.5198 18 8 4.0645 2.7874 -0.1170 19 1 -0.3633 0.5138 0.8901 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 1.6767 1.9562 0.8901 25 1 1.6767 1.9563 -0.8899 26 1 6.0985 0.8572 0.7446 27 1 5.7443 1.5585 2.3577 28 1 5.5215 6.0371 -1.3350 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258624739.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:41 Heat of formation + Delta-G solvation = -111.197099 kcal Electronic energy + Delta-G solvation = -11722.837529 eV Core-core repulsion = 9545.340649 eV Total energy + Delta-G solvation = -2177.496880 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.03918 -34.62725 -33.74125 -32.42606 -29.59205 -27.24688 -24.62364 -22.36896 -20.97137 -20.55179 -16.77887 -15.85079 -15.46870 -15.19054 -14.51971 -13.96838 -13.31037 -13.13437 -12.39918 -12.18594 -11.88623 -11.60880 -11.19956 -11.00931 -10.90605 -10.69754 -10.49010 -10.32680 -10.23885 -9.38822 -9.14040 -8.61169 -8.05957 -6.07260 -4.23584 3.26045 3.33871 3.37409 4.36292 4.67516 4.87193 5.27622 5.29753 5.41673 5.68231 5.82663 5.96720 6.04348 6.08936 6.12601 6.17025 6.32752 6.39853 6.46197 6.58418 6.71069 7.02134 7.46705 7.78793 8.14066 8.44485 8.88325 9.49157 10.99740 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.066906 B = 0.010060 C = 0.009393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.398503 B = 2782.767497 C = 2980.093195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.116 4.116 4 C 0.224 3.776 5 H 0.052 0.948 6 O -0.401 6.401 7 C 0.021 3.979 8 C 0.182 3.818 9 H 0.050 0.950 10 C -0.552 4.552 11 H 0.064 0.936 12 C 0.080 3.920 13 N -0.861 5.861 14 Si 0.895 3.105 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.282 1.282 18 O -0.366 6.366 19 H 0.053 0.947 20 H 0.052 0.948 21 H 0.050 0.950 22 H 0.058 0.942 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.714 -7.031 1.146 8.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.153 4.153 4 C 0.128 3.872 5 H 0.069 0.931 6 O -0.322 6.322 7 C -0.055 4.055 8 C 0.127 3.873 9 H 0.067 0.933 10 C -0.590 4.590 11 H 0.082 0.918 12 C -0.127 4.127 13 N -0.496 5.496 14 Si 0.722 3.278 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.208 1.208 18 O -0.287 6.287 19 H 0.072 0.928 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.077 0.923 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.998 -6.821 1.126 8.531 hybrid contribution 0.993 0.236 -0.699 1.237 sum -4.006 -6.585 0.427 7.719 Atomic orbital electron populations 1.21759 0.96108 1.01062 1.01727 1.21436 0.95357 0.96847 1.02166 1.21712 0.93698 0.96756 1.03158 1.24069 0.92816 0.85010 0.85292 0.93081 1.89229 1.28840 1.73679 1.40456 1.24395 0.83567 0.96282 1.01302 1.21067 0.84098 0.91191 0.90944 0.93278 1.21304 1.02672 1.04921 1.30065 0.91782 1.25066 0.95844 0.95761 0.95993 1.70056 1.30227 1.09461 1.39892 0.86519 0.82565 0.78363 0.80396 1.19572 1.20749 1.20756 1.89170 1.43444 1.25363 1.70689 0.92810 0.92872 0.93105 0.92293 0.91531 0.91153 0.90551 0.92054 0.89814 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.44 15 2 C -0.12 -1.77 5.86 -26.73 -0.16 -1.93 15 3 C -0.12 -2.10 5.33 -26.73 -0.14 -2.24 15 4 C 0.22 4.95 3.87 37.16 0.14 5.10 15 5 H 0.05 1.12 8.14 -51.93 -0.42 0.69 15 6 O -0.40 -8.82 11.24 -59.28 -0.67 -9.48 15 7 C 0.02 0.46 7.34 37.92 0.28 0.74 15 8 C 0.18 4.86 3.57 -27.13 -0.10 4.76 15 9 H 0.05 1.39 8.14 -51.93 -0.42 0.96 15 10 C -0.55 -15.54 8.78 -34.44 -0.30 -15.84 15 11 H 0.06 1.73 7.57 -52.48 -0.40 1.33 15 12 C 0.08 2.27 5.42 -17.82 -0.10 2.17 15 13 N -0.86 -25.75 12.93 55.43 0.72 -25.03 15 14 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 15 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 18 O -0.37 -9.93 10.47 -59.28 -0.62 -10.55 15 19 H 0.05 0.64 8.14 -51.93 -0.42 0.21 15 20 H 0.05 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 15 22 H 0.06 0.83 8.14 -51.93 -0.42 0.40 15 23 H 0.07 1.01 7.95 -51.93 -0.41 0.60 15 24 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 25 H 0.08 1.36 8.14 -51.93 -0.42 0.93 15 26 H 0.06 1.31 7.70 -51.93 -0.40 0.91 15 27 H 0.08 1.64 8.14 -51.93 -0.42 1.21 15 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 LS Contribution 240.39 15.07 3.62 3.62 Total: -1.00 -30.64 240.39 -6.12 -36.76 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -4.15 Total: -2.87 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 0.00 Total: -8.69 kcal Atomic # 7 Polarization: -25.75 SS G_CDS: 0.72 Total: -25.03 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -1.29 Total: -20.03 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.64 -6.12 -36.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258624739.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.437 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds