Wall clock time and date at job start Mon Mar 30 2020 02:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47027 * 2 1 4 4 C 1.53002 * 109.46671 * 179.97438 * 3 2 1 5 5 H 1.08995 * 110.14453 * 53.37697 * 4 3 2 6 6 O 1.44379 * 110.11662 * 291.74366 * 4 3 2 7 7 C 1.44836 * 103.23325 * 201.60230 * 6 4 3 8 8 C 1.54445 * 102.89940 * 36.61349 * 7 6 4 9 9 H 1.09004 * 110.32274 * 97.10275 * 8 7 6 10 10 C 1.50696 * 110.32419 * 219.30049 * 8 7 6 11 11 H 1.08004 * 119.99873 * 357.11245 * 10 8 7 12 12 C 1.37879 * 120.00461 * 177.10880 * 10 8 7 13 13 N 1.31519 * 119.99771 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 120.00022 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47450 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47216 * 120.00256 * 14 12 10 17 17 H 1.48505 * 109.47082 * 240.00089 * 14 12 10 18 18 O 1.43784 * 110.11003 * 175.00062 * 4 3 2 19 19 H 1.09005 * 109.46898 * 299.99340 * 1 2 3 20 20 H 1.09000 * 109.46893 * 59.99552 * 1 2 3 21 21 H 1.08998 * 109.47094 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46668 * 240.00054 * 2 1 3 23 23 H 1.09000 * 109.46893 * 120.00448 * 2 1 3 24 24 H 1.09005 * 109.46743 * 60.00565 * 3 2 1 25 25 H 1.08993 * 109.47242 * 299.99972 * 3 2 1 26 26 H 1.09002 * 110.73130 * 278.26050 * 7 6 4 27 27 H 1.09002 * 110.72939 * 154.96896 * 7 6 4 28 28 H 0.96998 * 119.99613 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9457 0.8318 -0.8204 6 8 4.0660 0.9403 1.2602 7 6 5.4110 1.4741 1.3234 8 6 5.2580 2.8709 0.6825 9 1 5.1436 3.6314 1.4550 10 6 6.4494 3.1814 -0.1866 11 1 7.2704 2.4823 -0.2472 12 6 6.4913 4.3578 -0.9044 13 7 5.4918 5.2093 -0.8303 14 14 7.9678 4.7422 -1.9821 15 1 8.9492 3.6313 -1.8920 16 1 7.5250 4.8991 -3.3908 17 1 8.6035 6.0022 -1.5198 18 8 4.0645 2.7874 -0.1170 19 1 -0.3633 0.5138 0.8901 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 1.6767 1.9562 0.8901 25 1 1.6767 1.9563 -0.8899 26 1 6.0985 0.8572 0.7446 27 1 5.7443 1.5585 2.3577 28 1 5.5215 6.0371 -1.3350 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258624739.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:41 Heat of formation + Delta-G solvation = -131.265814 kcal Electronic energy + Delta-G solvation = -11723.707773 eV Core-core repulsion = 9545.340649 eV Total energy + Delta-G solvation = -2178.367125 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.89054 -36.09276 -35.55955 -34.49669 -31.36055 -28.84404 -26.61895 -23.84855 -22.94002 -21.96893 -18.88480 -17.67033 -17.27707 -16.90318 -16.40146 -15.36759 -15.16017 -14.46830 -14.29806 -13.94269 -13.48599 -12.98461 -12.94222 -12.84299 -12.47026 -12.42411 -12.15117 -11.92045 -11.58500 -11.30566 -10.97539 -10.72852 -10.07829 -8.21222 -6.45851 1.40305 1.41042 1.54187 2.37210 2.88441 3.04686 3.44200 3.99391 4.13438 4.20123 4.23399 4.34396 4.44463 4.61359 4.67966 4.81420 4.90307 5.01722 5.11798 5.26942 5.36711 5.40312 5.46464 5.62388 6.03074 6.46610 6.79148 7.32111 8.87083 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.066906 B = 0.010060 C = 0.009393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.398503 B = 2782.767497 C = 2980.093195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C -0.110 4.110 4 C 0.215 3.785 5 H 0.055 0.945 6 O -0.398 6.398 7 C 0.031 3.969 8 C 0.171 3.829 9 H 0.019 0.981 10 C -0.570 4.570 11 H 0.072 0.928 12 C 0.023 3.977 13 N -0.903 5.903 14 Si 0.970 3.030 15 H -0.259 1.259 16 H -0.280 1.280 17 H -0.274 1.274 18 O -0.400 6.400 19 H 0.054 0.946 20 H 0.058 0.942 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.110 0.890 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.449 -8.199 0.711 9.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C -0.147 4.147 4 C 0.120 3.880 5 H 0.073 0.927 6 O -0.319 6.319 7 C -0.046 4.046 8 C 0.115 3.885 9 H 0.037 0.963 10 C -0.608 4.608 11 H 0.090 0.910 12 C -0.179 4.179 13 N -0.540 5.540 14 Si 0.793 3.207 15 H -0.183 1.183 16 H -0.206 1.206 17 H -0.200 1.200 18 O -0.321 6.321 19 H 0.073 0.927 20 H 0.077 0.923 21 H 0.090 0.910 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.128 0.872 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.735 -8.011 0.704 9.332 hybrid contribution 0.872 0.577 -0.530 1.173 sum -3.862 -7.434 0.173 8.379 Atomic orbital electron populations 1.21731 0.93858 1.02582 1.02080 1.21401 0.97252 0.94093 1.02377 1.21721 0.90834 0.99331 1.02853 1.24414 0.95124 0.83047 0.85402 0.92749 1.89223 1.28823 1.73413 1.40414 1.24332 0.83856 0.93696 1.02673 1.21031 0.83966 0.93007 0.90468 0.96302 1.21699 1.03462 1.05379 1.30222 0.90991 1.26019 0.98929 0.95526 0.97446 1.70197 1.32590 1.10066 1.41136 0.85355 0.78752 0.78556 0.78005 1.18265 1.20560 1.19976 1.89102 1.43739 1.28277 1.71027 0.92721 0.92336 0.91005 0.91452 0.91943 0.91882 0.90443 0.91045 0.87170 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.91 71.98 0.71 -2.44 15 2 C -0.11 -3.12 5.86 30.59 0.18 -2.95 15 3 C -0.11 -3.90 5.33 30.59 0.16 -3.74 15 4 C 0.22 9.45 3.87 71.98 0.28 9.73 15 5 H 0.06 2.34 8.14 -2.39 -0.02 2.32 15 6 O -0.40 -17.10 11.24 -125.98 -1.42 -18.51 15 7 C 0.03 1.33 7.34 72.47 0.53 1.86 15 8 C 0.17 9.23 3.57 30.34 0.11 9.34 15 9 H 0.02 1.12 8.14 -2.38 -0.02 1.10 15 10 C -0.57 -32.17 8.78 25.60 0.22 -31.95 15 11 H 0.07 3.83 7.57 -2.91 -0.02 3.81 15 12 C 0.02 1.33 5.42 84.65 0.46 1.78 15 13 N -0.90 -54.99 12.93 21.45 0.28 -54.71 15 14 Si 0.97 43.53 29.54 68.60 2.03 45.56 15 15 H -0.26 -10.99 7.11 99.48 0.71 -10.28 15 16 H -0.28 -12.40 7.11 99.48 0.71 -11.69 15 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 18 O -0.40 -22.09 10.47 -125.98 -1.32 -23.41 15 19 H 0.05 1.17 8.14 -2.38 -0.02 1.15 15 20 H 0.06 1.21 8.14 -2.39 -0.02 1.19 15 21 H 0.07 1.28 8.14 -2.39 -0.02 1.26 15 22 H 0.07 1.74 8.14 -2.39 -0.02 1.72 15 23 H 0.06 1.77 7.95 -2.39 -0.02 1.75 15 24 H 0.06 2.31 8.14 -2.38 -0.02 2.29 15 25 H 0.08 2.71 8.14 -2.39 -0.02 2.69 15 26 H 0.07 2.94 7.70 -2.39 -0.02 2.93 15 27 H 0.11 4.13 8.14 -2.39 -0.02 4.11 15 28 H 0.26 15.04 8.31 -92.71 -0.77 14.27 15 Total: -1.00 -65.34 240.39 3.34 -61.99 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 1.12 Total: 7.43 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 2.66 Total: -18.35 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.28 Total: -54.71 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -2.73 Total: -41.92 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -65.34 3.34 -61.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258624739.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.274 kcal (2) G-P(sol) polarization free energy of solvation -65.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds