Wall clock time and date at job start Mon Mar 30 2020 02:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09001 * 110.09310 * 305.69648 * 4 3 2 6 6 O 1.43782 * 110.11480 * 67.29725 * 4 3 2 7 7 C 1.43984 * 107.05766 * 144.21663 * 6 4 3 8 8 C 1.54451 * 105.09289 * 358.37331 * 7 6 4 9 9 H 1.08995 * 110.88799 * 96.57904 * 8 7 6 10 10 C 1.50703 * 110.72699 * 219.80370 * 8 7 6 11 11 H 1.08007 * 119.99636 * 354.92543 * 10 8 7 12 12 C 1.37874 * 120.00285 * 174.93387 * 10 8 7 13 13 N 1.31514 * 120.00126 * 359.97438 * 12 10 8 14 14 Si 1.86805 * 120.00048 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47288 * 59.99482 * 14 12 10 16 16 H 1.48496 * 109.46836 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46909 * 299.99355 * 14 12 10 18 18 O 1.44384 * 110.11119 * 184.10602 * 4 3 2 19 19 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 20 20 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 21 21 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 23 23 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 24 24 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 25 25 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 26 26 H 1.09000 * 110.35625 * 239.44450 * 7 6 4 27 27 H 1.09000 * 110.35208 * 117.29429 * 7 6 4 28 28 H 0.96995 * 120.00091 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9448 0.8449 0.8305 6 8 4.0639 0.9214 -1.2464 7 6 5.2576 1.6590 -1.5691 8 6 5.4114 2.6927 -0.4318 9 1 6.0995 2.3306 0.3320 10 6 5.8726 4.0201 -0.9762 11 1 6.1253 4.1164 -2.0219 12 6 5.9720 5.1114 -0.1396 13 7 5.6640 4.9942 1.1336 14 14 6.5444 6.7566 -0.8144 15 1 5.6130 7.2054 -1.8803 16 1 6.5644 7.7604 0.2798 17 1 7.9102 6.6119 -1.3790 18 8 4.0666 2.7946 0.0964 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8932 -0.5139 0.8899 24 1 1.6767 1.9563 0.8900 25 1 1.6767 1.9563 -0.8900 26 1 5.1432 2.1651 -2.5277 27 1 6.1199 0.9927 -1.5940 28 1 5.7336 5.7620 1.7221 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258624745.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:43 Heat of formation + Delta-G solvation = -111.870255 kcal Electronic energy + Delta-G solvation = -11704.083406 eV Core-core repulsion = 9526.557336 eV Total energy + Delta-G solvation = -2177.526070 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.02928 -34.62915 -33.74513 -32.49298 -29.61841 -27.25965 -24.65888 -22.27073 -21.34933 -20.18363 -16.92626 -16.17275 -15.11184 -14.66748 -14.52820 -14.23321 -13.75668 -13.04419 -12.40237 -12.32008 -11.97643 -11.38494 -11.22866 -11.11867 -10.88733 -10.75767 -10.54781 -10.32285 -9.97671 -9.37878 -8.93103 -8.67325 -8.35389 -6.12479 -4.27301 3.28003 3.32472 3.34886 4.33648 4.66136 4.86920 5.25076 5.29959 5.41588 5.70530 5.79508 5.98923 6.04377 6.09686 6.13067 6.20496 6.30604 6.41652 6.50213 6.61267 6.72257 7.12381 7.28701 7.76542 8.07812 8.36214 8.80851 9.44212 10.95713 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.067250 B = 0.009936 C = 0.009283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.259413 B = 2817.486756 C = 3015.613991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.114 4.114 4 C 0.216 3.784 5 H 0.050 0.950 6 O -0.406 6.406 7 C 0.025 3.975 8 C 0.180 3.820 9 H 0.038 0.962 10 C -0.537 4.537 11 H 0.068 0.932 12 C 0.078 3.922 13 N -0.863 5.863 14 Si 0.900 3.100 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.274 1.274 18 O -0.355 6.355 19 H 0.052 0.948 20 H 0.053 0.947 21 H 0.050 0.950 22 H 0.067 0.933 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.926 -6.321 -1.492 8.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.152 4.152 4 C 0.120 3.880 5 H 0.068 0.932 6 O -0.328 6.328 7 C -0.051 4.051 8 C 0.125 3.875 9 H 0.056 0.944 10 C -0.574 4.574 11 H 0.087 0.913 12 C -0.129 4.129 13 N -0.498 5.498 14 Si 0.726 3.274 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 O -0.275 6.275 19 H 0.071 0.929 20 H 0.072 0.928 21 H 0.069 0.931 22 H 0.085 0.915 23 H 0.077 0.923 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.147 -6.195 -1.338 8.164 hybrid contribution 0.485 0.867 -0.171 1.008 sum -4.661 -5.329 -1.509 7.239 Atomic orbital electron populations 1.21757 0.96120 1.01061 1.01726 1.21422 0.95327 0.96794 1.02173 1.21670 0.93549 0.96803 1.03145 1.24092 0.93217 0.84888 0.85808 0.93223 1.88717 1.42688 1.60300 1.41110 1.24113 0.86021 0.93840 1.01129 1.21302 0.81804 0.95005 0.89396 0.94447 1.20879 1.46534 0.94048 0.95957 0.91349 1.25089 0.93738 0.99348 0.94689 1.70021 1.44949 1.30944 1.03908 0.86550 0.79310 0.82797 0.78713 1.19897 1.21041 1.19910 1.89778 1.30787 1.23089 1.83819 0.92892 0.92804 0.93097 0.91454 0.92345 0.90698 0.91063 0.91040 0.92233 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 37.15 0.37 -1.45 15 2 C -0.12 -1.77 5.85 -26.74 -0.16 -1.92 15 3 C -0.11 -2.08 5.34 -26.73 -0.14 -2.22 15 4 C 0.22 4.76 3.88 37.16 0.14 4.91 15 5 H 0.05 1.06 8.14 -51.93 -0.42 0.64 15 6 O -0.41 -9.05 10.94 -59.28 -0.65 -9.70 15 7 C 0.03 0.58 7.65 37.92 0.29 0.87 15 8 C 0.18 4.80 3.25 -27.12 -0.09 4.71 15 9 H 0.04 1.04 8.14 -51.93 -0.42 0.62 15 10 C -0.54 -15.16 8.80 -34.44 -0.30 -15.47 15 11 H 0.07 1.84 7.59 -52.48 -0.40 1.44 15 12 C 0.08 2.21 5.42 -17.82 -0.10 2.11 15 13 N -0.86 -25.64 12.95 55.43 0.72 -24.92 15 14 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 15 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 18 O -0.35 -9.64 10.78 -59.28 -0.64 -10.28 15 19 H 0.05 0.61 8.14 -51.93 -0.42 0.19 15 20 H 0.05 0.65 8.14 -51.93 -0.42 0.22 15 21 H 0.05 0.54 8.14 -51.93 -0.42 0.11 15 22 H 0.07 1.03 7.92 -51.93 -0.41 0.62 15 23 H 0.06 0.82 8.14 -51.93 -0.42 0.39 15 24 H 0.07 1.33 8.14 -51.93 -0.42 0.91 15 25 H 0.07 1.34 8.14 -51.93 -0.42 0.92 15 26 H 0.07 1.59 7.69 -51.93 -0.40 1.19 15 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 15 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 LS Contribution 240.42 15.07 3.62 3.62 Total: -1.00 -30.45 240.42 -6.10 -36.55 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: -4.15 Total: -3.03 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 0.02 Total: -8.47 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.72 Total: -24.92 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -1.29 Total: -19.97 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.45 -6.10 -36.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258624745.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.316 kcal (2) G-P(sol) polarization free energy of solvation -30.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds