Wall clock time and date at job start Mon Mar 30 2020 02:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09001 * 110.09310 * 305.69648 * 4 3 2 6 6 O 1.43782 * 110.11480 * 67.29725 * 4 3 2 7 7 C 1.43984 * 107.05766 * 144.21663 * 6 4 3 8 8 C 1.54451 * 105.09289 * 358.37331 * 7 6 4 9 9 H 1.08995 * 110.88799 * 96.57904 * 8 7 6 10 10 C 1.50703 * 110.72699 * 219.80370 * 8 7 6 11 11 H 1.08007 * 119.99636 * 354.92543 * 10 8 7 12 12 C 1.37874 * 120.00285 * 174.93387 * 10 8 7 13 13 N 1.31514 * 120.00126 * 359.97438 * 12 10 8 14 14 Si 1.86805 * 120.00048 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47288 * 59.99482 * 14 12 10 16 16 H 1.48496 * 109.46836 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46909 * 299.99355 * 14 12 10 18 18 O 1.44384 * 110.11119 * 184.10602 * 4 3 2 19 19 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 20 20 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 21 21 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 23 23 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 24 24 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 25 25 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 26 26 H 1.09000 * 110.35625 * 239.44450 * 7 6 4 27 27 H 1.09000 * 110.35208 * 117.29429 * 7 6 4 28 28 H 0.96995 * 120.00091 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9448 0.8449 0.8305 6 8 4.0639 0.9214 -1.2464 7 6 5.2576 1.6590 -1.5691 8 6 5.4114 2.6927 -0.4318 9 1 6.0995 2.3306 0.3320 10 6 5.8726 4.0201 -0.9762 11 1 6.1253 4.1164 -2.0219 12 6 5.9720 5.1114 -0.1396 13 7 5.6640 4.9942 1.1336 14 14 6.5444 6.7566 -0.8144 15 1 5.6130 7.2054 -1.8803 16 1 6.5644 7.7604 0.2798 17 1 7.9102 6.6119 -1.3790 18 8 4.0666 2.7946 0.0964 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8932 -0.5139 0.8899 24 1 1.6767 1.9563 0.8900 25 1 1.6767 1.9563 -0.8900 26 1 5.1432 2.1651 -2.5277 27 1 6.1199 0.9927 -1.5940 28 1 5.7336 5.7620 1.7221 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258624745.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:43 Heat of formation + Delta-G solvation = -131.727711 kcal Electronic energy + Delta-G solvation = -11704.944490 eV Core-core repulsion = 9526.557336 eV Total energy + Delta-G solvation = -2178.387154 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.89073 -36.10529 -35.56352 -34.55673 -31.39599 -28.85853 -26.65495 -23.74791 -23.20644 -21.73613 -18.99333 -17.98949 -16.94440 -16.59886 -16.26905 -15.85595 -15.32887 -14.43210 -14.35827 -13.77475 -13.72213 -13.04713 -12.87379 -12.78710 -12.63731 -12.34179 -12.04948 -11.86878 -11.56050 -11.31421 -10.91539 -10.64685 -10.33427 -8.25735 -6.48930 1.40860 1.44476 1.52374 2.36251 2.84052 3.02259 3.45493 3.96848 4.12543 4.20027 4.22347 4.32951 4.45597 4.57856 4.72029 4.81247 4.89614 5.04194 5.14410 5.23451 5.28467 5.41650 5.46250 5.60678 5.99303 6.39723 6.70095 7.27693 8.83452 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.067250 B = 0.009936 C = 0.009283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.259413 B = 2817.486756 C = 3015.613991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C -0.108 4.108 4 C 0.208 3.792 5 H 0.057 0.943 6 O -0.404 6.404 7 C 0.034 3.966 8 C 0.170 3.830 9 H 0.014 0.986 10 C -0.561 4.561 11 H 0.076 0.924 12 C 0.023 3.977 13 N -0.903 5.903 14 Si 0.973 3.027 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.259 1.259 18 O -0.389 6.389 19 H 0.058 0.942 20 H 0.053 0.947 21 H 0.071 0.929 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.338 -6.499 -2.239 8.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C -0.146 4.146 4 C 0.113 3.887 5 H 0.074 0.926 6 O -0.326 6.326 7 C -0.042 4.042 8 C 0.114 3.886 9 H 0.032 0.968 10 C -0.597 4.597 11 H 0.094 0.906 12 C -0.180 4.180 13 N -0.539 5.539 14 Si 0.796 3.204 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.184 1.184 18 O -0.310 6.310 19 H 0.077 0.923 20 H 0.072 0.928 21 H 0.090 0.910 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.559 -6.395 -2.097 8.729 hybrid contribution 0.605 0.851 0.088 1.048 sum -4.955 -5.544 -2.009 7.702 Atomic orbital electron populations 1.21728 0.93863 1.02590 1.02070 1.21389 0.97224 0.94045 1.02387 1.21693 0.90735 0.99377 1.02809 1.24455 0.95477 0.82928 0.85867 0.92581 1.88698 1.42619 1.60102 1.41228 1.24037 0.87108 0.93454 0.99613 1.21278 0.81474 0.95720 0.90109 0.96796 1.21316 1.46830 0.95086 0.96506 0.90601 1.26045 0.93630 1.03458 0.94854 1.70158 1.46256 1.32150 1.05347 0.85398 0.79345 0.77593 0.78022 1.19385 1.20632 1.18384 1.89708 1.30911 1.26095 1.84291 0.92297 0.92782 0.90986 0.91974 0.91399 0.90453 0.91965 0.90671 0.89524 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.91 71.98 0.71 -2.45 15 2 C -0.11 -3.12 5.85 30.59 0.18 -2.94 15 3 C -0.11 -3.87 5.34 30.59 0.16 -3.71 15 4 C 0.21 9.14 3.88 71.98 0.28 9.42 15 5 H 0.06 2.38 8.14 -2.39 -0.02 2.36 15 6 O -0.40 -17.64 10.94 -125.99 -1.38 -19.02 15 7 C 0.03 1.52 7.65 72.48 0.55 2.08 15 8 C 0.17 9.15 3.25 30.34 0.10 9.25 15 9 H 0.01 0.82 8.14 -2.39 -0.02 0.80 15 10 C -0.56 -31.79 8.80 25.60 0.23 -31.56 15 11 H 0.08 4.05 7.59 -2.91 -0.02 4.03 15 12 C 0.02 1.30 5.42 84.65 0.46 1.76 15 13 N -0.90 -54.46 12.95 21.45 0.28 -54.19 15 14 Si 0.97 43.43 29.54 68.60 2.03 45.46 15 15 H -0.27 -11.70 7.11 99.48 0.71 -11.00 15 16 H -0.28 -12.25 7.11 99.48 0.71 -11.54 15 17 H -0.26 -10.89 7.11 99.48 0.71 -10.18 15 18 O -0.39 -21.50 10.78 -125.99 -1.36 -22.86 15 19 H 0.06 1.22 8.14 -2.39 -0.02 1.20 15 20 H 0.05 1.17 8.14 -2.39 -0.02 1.15 15 21 H 0.07 1.29 8.14 -2.39 -0.02 1.27 15 22 H 0.06 1.79 7.92 -2.39 -0.02 1.77 15 23 H 0.07 1.75 8.14 -2.39 -0.02 1.73 15 24 H 0.08 2.70 8.14 -2.39 -0.02 2.68 15 25 H 0.06 2.31 8.14 -2.39 -0.02 2.29 15 26 H 0.08 3.27 7.69 -2.39 -0.02 3.25 15 27 H 0.09 3.35 8.14 -2.39 -0.02 3.33 15 28 H 0.27 15.06 8.31 -92.71 -0.77 14.29 15 Total: -1.00 -64.71 240.42 3.36 -61.35 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 1.12 Total: 7.42 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: 2.67 Total: -18.16 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.28 Total: -54.19 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -2.74 Total: -41.88 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -64.71 3.36 -61.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258624745.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.377 kcal (2) G-P(sol) polarization free energy of solvation -64.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds