Wall clock time and date at job start Mon Mar 30 2020 02:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53011 * 109.46869 * 2 1 4 4 C 1.52994 * 109.46869 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.63407 * 305.39088 * 4 3 2 6 6 O 1.43753 * 109.51237 * 65.71199 * 4 3 2 7 7 C 1.44788 * 104.81570 * 144.11266 * 6 4 3 8 8 C 1.54915 * 101.72299 * 323.90084 * 7 6 4 9 9 H 1.09005 * 110.84118 * 277.09094 * 8 7 6 10 10 C 1.50695 * 110.69247 * 153.95784 * 8 7 6 11 11 H 1.08004 * 120.00546 * 5.16452 * 10 8 7 12 12 C 1.37885 * 119.99721 * 184.88703 * 10 8 7 13 13 N 1.31514 * 120.00035 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99853 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47228 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46793 * 120.00131 * 14 12 10 17 17 H 1.48500 * 109.47000 * 240.00224 * 14 12 10 18 18 O 1.43369 * 109.63015 * 184.99988 * 4 3 2 19 19 H 1.08998 * 109.47563 * 299.99946 * 1 2 3 20 20 H 1.09004 * 109.47530 * 60.00269 * 1 2 3 21 21 H 1.09007 * 109.46930 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47461 * 240.00507 * 2 1 3 23 23 H 1.08995 * 109.47704 * 119.99785 * 2 1 3 24 24 H 1.09004 * 109.46665 * 60.00020 * 3 2 1 25 25 H 1.08995 * 109.46782 * 300.00350 * 3 2 1 26 26 H 1.09006 * 110.97844 * 205.78635 * 7 6 4 27 27 H 1.09004 * 110.97595 * 82.01064 * 7 6 4 28 28 H 0.97000 * 119.99706 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9364 0.8479 0.8360 6 8 4.0495 0.8855 -1.2360 7 6 5.2419 1.6457 -1.5467 8 6 4.8512 3.0605 -1.0514 9 1 4.2653 3.5871 -1.8049 10 6 6.0785 3.8538 -0.6836 11 1 7.0611 3.4429 -0.8632 12 6 5.9472 5.1067 -0.1231 13 7 4.7509 5.6092 0.0910 14 14 7.4686 6.0898 0.3335 15 1 8.6840 5.3069 -0.0057 16 1 7.4770 7.3682 -0.4220 17 1 7.4542 6.3759 1.7906 18 8 4.0515 2.7878 0.1170 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 1.6765 1.9564 0.8900 25 1 1.6765 1.9564 -0.8899 26 1 5.4352 1.6472 -2.6195 27 1 6.1024 1.2637 -0.9973 28 1 4.6585 6.4905 0.4857 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258624748.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:45 Heat of formation + Delta-G solvation = -110.785990 kcal Electronic energy + Delta-G solvation = -11725.455169 eV Core-core repulsion = 9547.976116 eV Total energy + Delta-G solvation = -2177.479053 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.08509 -34.56105 -33.78321 -32.48172 -29.58373 -27.19788 -24.65520 -22.31146 -21.07738 -20.53848 -16.85210 -15.78103 -15.50248 -15.12663 -14.50864 -13.88875 -13.41004 -13.00486 -12.46791 -12.20150 -11.80442 -11.60023 -11.41406 -11.03976 -10.94333 -10.68391 -10.48656 -10.28851 -10.23385 -9.33133 -9.03137 -8.65315 -8.08012 -6.10223 -4.25753 3.25736 3.33484 3.37110 4.34411 4.60596 4.96212 5.27545 5.32687 5.45077 5.66003 5.86637 5.98564 6.07419 6.10370 6.15902 6.17560 6.37650 6.39427 6.47468 6.63572 6.76618 6.91593 7.44464 7.78209 8.11859 8.47816 8.86715 9.46325 10.97490 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.074767 B = 0.009951 C = 0.009133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.406972 B = 2812.995659 C = 3065.179241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.128 4.128 4 C 0.224 3.776 5 H 0.057 0.943 6 O -0.402 6.402 7 C 0.021 3.979 8 C 0.187 3.813 9 H 0.040 0.960 10 C -0.543 4.543 11 H 0.068 0.932 12 C 0.079 3.921 13 N -0.860 5.860 14 Si 0.897 3.103 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.281 1.281 18 O -0.365 6.365 19 H 0.052 0.948 20 H 0.052 0.948 21 H 0.049 0.951 22 H 0.066 0.934 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.062 0.938 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.604 -7.122 -0.486 7.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.166 4.166 4 C 0.128 3.872 5 H 0.075 0.925 6 O -0.323 6.323 7 C -0.056 4.056 8 C 0.132 3.868 9 H 0.058 0.942 10 C -0.580 4.580 11 H 0.086 0.914 12 C -0.128 4.128 13 N -0.496 5.496 14 Si 0.724 3.276 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.207 1.207 18 O -0.286 6.286 19 H 0.071 0.929 20 H 0.072 0.928 21 H 0.068 0.932 22 H 0.084 0.916 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.080 0.920 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.854 -6.996 -0.372 7.996 hybrid contribution 0.842 0.580 0.301 1.066 sum -3.012 -6.415 -0.071 7.088 Atomic orbital electron populations 1.21763 0.96257 1.00952 1.01703 1.21429 0.95255 0.97048 1.02017 1.22000 0.95026 0.96529 1.03018 1.23832 0.92418 0.84804 0.86190 0.92528 1.89016 1.42572 1.59091 1.41660 1.24521 0.87474 0.92790 1.00774 1.21276 0.90634 0.90242 0.84652 0.94215 1.21039 0.91342 1.00715 1.44894 0.91412 1.25084 0.96091 0.97332 0.94275 1.70053 1.21874 1.16850 1.40815 0.86474 0.82933 0.79859 0.78340 1.19510 1.20748 1.20714 1.89223 1.68942 1.25273 1.45144 0.92927 0.92845 0.93197 0.91566 0.92449 0.90763 0.91388 0.89497 0.92004 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.15 0.37 -1.51 15 2 C -0.12 -1.80 5.84 -26.73 -0.16 -1.96 15 3 C -0.13 -2.37 5.30 -26.73 -0.14 -2.52 15 4 C 0.22 4.91 4.02 37.15 0.15 5.06 15 5 H 0.06 1.19 8.14 -51.93 -0.42 0.76 15 6 O -0.40 -8.77 10.91 -59.04 -0.64 -9.42 15 7 C 0.02 0.45 7.37 38.17 0.28 0.73 15 8 C 0.19 4.97 3.51 -26.88 -0.09 4.87 15 9 H 0.04 1.13 8.14 -51.93 -0.42 0.70 15 10 C -0.54 -15.23 8.83 -34.44 -0.30 -15.53 15 11 H 0.07 1.82 7.78 -52.48 -0.41 1.41 15 12 C 0.08 2.23 5.42 -17.82 -0.10 2.13 15 13 N -0.86 -25.64 12.95 55.43 0.72 -24.92 15 14 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 15 15 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 18 O -0.36 -9.85 10.46 -59.04 -0.62 -10.47 15 19 H 0.05 0.63 8.14 -51.93 -0.42 0.21 15 20 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 15 22 H 0.07 1.03 7.85 -51.93 -0.41 0.62 15 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.07 1.36 8.14 -51.93 -0.42 0.93 15 25 H 0.07 1.32 8.14 -51.93 -0.42 0.89 15 26 H 0.09 1.70 8.14 -51.93 -0.42 1.28 15 27 H 0.06 1.33 8.04 -51.93 -0.42 0.91 15 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 LS Contribution 240.63 15.07 3.63 3.63 Total: -1.00 -30.35 240.63 -6.11 -36.45 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -4.17 Total: -2.71 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 0.01 Total: -8.72 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.72 Total: -24.92 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -1.26 Total: -19.89 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.35 -6.11 -36.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258624748.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.333 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds