Wall clock time and date at job start Mon Mar 30 2020 02:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53011 * 109.46869 * 2 1 4 4 C 1.52994 * 109.46869 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.63407 * 305.39088 * 4 3 2 6 6 O 1.43753 * 109.51237 * 65.71199 * 4 3 2 7 7 C 1.44788 * 104.81570 * 144.11266 * 6 4 3 8 8 C 1.54915 * 101.72299 * 323.90084 * 7 6 4 9 9 H 1.09005 * 110.84118 * 277.09094 * 8 7 6 10 10 C 1.50695 * 110.69247 * 153.95784 * 8 7 6 11 11 H 1.08004 * 120.00546 * 5.16452 * 10 8 7 12 12 C 1.37885 * 119.99721 * 184.88703 * 10 8 7 13 13 N 1.31514 * 120.00035 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99853 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47228 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46793 * 120.00131 * 14 12 10 17 17 H 1.48500 * 109.47000 * 240.00224 * 14 12 10 18 18 O 1.43369 * 109.63015 * 184.99988 * 4 3 2 19 19 H 1.08998 * 109.47563 * 299.99946 * 1 2 3 20 20 H 1.09004 * 109.47530 * 60.00269 * 1 2 3 21 21 H 1.09007 * 109.46930 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47461 * 240.00507 * 2 1 3 23 23 H 1.08995 * 109.47704 * 119.99785 * 2 1 3 24 24 H 1.09004 * 109.46665 * 60.00020 * 3 2 1 25 25 H 1.08995 * 109.46782 * 300.00350 * 3 2 1 26 26 H 1.09006 * 110.97844 * 205.78635 * 7 6 4 27 27 H 1.09004 * 110.97595 * 82.01064 * 7 6 4 28 28 H 0.97000 * 119.99706 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9364 0.8479 0.8360 6 8 4.0495 0.8855 -1.2360 7 6 5.2419 1.6457 -1.5467 8 6 4.8512 3.0605 -1.0514 9 1 4.2653 3.5871 -1.8049 10 6 6.0785 3.8538 -0.6836 11 1 7.0611 3.4429 -0.8632 12 6 5.9472 5.1067 -0.1231 13 7 4.7509 5.6092 0.0910 14 14 7.4686 6.0898 0.3335 15 1 8.6840 5.3069 -0.0057 16 1 7.4770 7.3682 -0.4220 17 1 7.4542 6.3759 1.7906 18 8 4.0515 2.7878 0.1170 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 1.6765 1.9564 0.8900 25 1 1.6765 1.9564 -0.8899 26 1 5.4352 1.6472 -2.6195 27 1 6.1024 1.2637 -0.9973 28 1 4.6585 6.4905 0.4857 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258624748.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:45 Heat of formation + Delta-G solvation = -130.561708 kcal Electronic energy + Delta-G solvation = -11726.312708 eV Core-core repulsion = 9547.976116 eV Total energy + Delta-G solvation = -2178.336592 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.92561 -36.06729 -35.57932 -34.53903 -31.36123 -28.81007 -26.63368 -23.81142 -23.03378 -21.98263 -18.93212 -17.63586 -17.33322 -16.79998 -16.36582 -15.34014 -15.08951 -14.54712 -14.34598 -13.97395 -13.39651 -13.22320 -12.92169 -12.83926 -12.53910 -12.40337 -12.17608 -11.92547 -11.57779 -11.25280 -10.90313 -10.71968 -10.05017 -8.23146 -6.46994 1.41181 1.42202 1.55446 2.37070 2.80008 3.07284 3.52545 3.98125 4.11095 4.20409 4.22981 4.34085 4.49364 4.60390 4.71737 4.79165 4.91126 4.98217 5.08668 5.24420 5.35562 5.40293 5.46105 5.63284 6.02464 6.49251 6.80754 7.30413 8.86027 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.074767 B = 0.009951 C = 0.009133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.406972 B = 2812.995659 C = 3065.179241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.122 4.122 4 C 0.214 3.786 5 H 0.070 0.930 6 O -0.399 6.399 7 C 0.032 3.968 8 C 0.176 3.824 9 H 0.008 0.992 10 C -0.562 4.562 11 H 0.077 0.923 12 C 0.022 3.978 13 N -0.903 5.903 14 Si 0.973 3.027 15 H -0.258 1.258 16 H -0.274 1.274 17 H -0.280 1.280 18 O -0.399 6.399 19 H 0.057 0.943 20 H 0.050 0.950 21 H 0.072 0.928 22 H 0.061 0.939 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.113 0.887 27 H 0.071 0.929 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.041 -8.013 -0.270 8.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C -0.160 4.160 4 C 0.118 3.882 5 H 0.087 0.913 6 O -0.320 6.320 7 C -0.044 4.044 8 C 0.121 3.879 9 H 0.026 0.974 10 C -0.599 4.599 11 H 0.095 0.905 12 C -0.180 4.180 13 N -0.540 5.540 14 Si 0.796 3.204 15 H -0.181 1.181 16 H -0.200 1.200 17 H -0.206 1.206 18 O -0.321 6.321 19 H 0.076 0.924 20 H 0.070 0.930 21 H 0.091 0.909 22 H 0.080 0.920 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.071 0.929 26 H 0.131 0.869 27 H 0.090 0.910 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.291 -7.910 -0.167 8.569 hybrid contribution 0.624 0.812 0.224 1.049 sum -2.667 -7.097 0.057 7.582 Atomic orbital electron populations 1.21738 0.94160 1.02516 1.01913 1.21387 0.97040 0.94204 1.02379 1.21968 0.92667 0.99089 1.02280 1.24188 0.94411 0.82947 0.86625 0.91276 1.89008 1.42570 1.58774 1.41647 1.24445 0.87653 0.89969 1.02381 1.21216 0.89987 0.92536 0.84152 0.97406 1.21461 0.92220 1.01464 1.44805 0.90496 1.26051 0.99393 0.98546 0.94050 1.70194 1.24417 1.17422 1.41948 0.85307 0.78995 0.78267 0.77826 1.18122 1.19970 1.20583 1.89147 1.69509 1.28041 1.45385 0.92396 0.93047 0.90947 0.92022 0.91223 0.90778 0.92873 0.86900 0.91049 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.91 71.98 0.71 -2.61 15 2 C -0.11 -3.18 5.84 30.60 0.18 -3.00 15 3 C -0.12 -4.48 5.30 30.60 0.16 -4.32 15 4 C 0.21 9.30 4.02 71.98 0.29 9.59 15 5 H 0.07 2.82 8.14 -2.39 -0.02 2.80 15 6 O -0.40 -17.00 10.91 -126.22 -1.38 -18.37 15 7 C 0.03 1.36 7.37 72.64 0.54 1.90 15 8 C 0.18 9.50 3.51 30.50 0.11 9.61 15 9 H 0.01 0.48 8.14 -2.38 -0.02 0.46 15 10 C -0.56 -31.65 8.83 25.60 0.23 -31.42 15 11 H 0.08 4.06 7.78 -2.91 -0.02 4.04 15 12 C 0.02 1.26 5.42 84.66 0.46 1.72 15 13 N -0.90 -54.83 12.95 21.45 0.28 -54.55 15 14 Si 0.97 43.36 29.54 68.60 2.03 45.39 15 15 H -0.26 -10.82 7.11 99.48 0.71 -10.11 15 16 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 17 H -0.28 -12.34 7.11 99.48 0.71 -11.64 15 18 O -0.40 -21.92 10.46 -126.22 -1.32 -23.25 15 19 H 0.06 1.26 8.14 -2.39 -0.02 1.24 15 20 H 0.05 1.18 8.14 -2.38 -0.02 1.17 15 21 H 0.07 1.34 8.14 -2.38 -0.02 1.33 15 22 H 0.06 1.80 7.85 -2.39 -0.02 1.78 15 23 H 0.07 1.80 8.14 -2.39 -0.02 1.78 15 24 H 0.07 2.69 8.14 -2.39 -0.02 2.67 15 25 H 0.05 2.08 8.14 -2.39 -0.02 2.06 15 26 H 0.11 4.23 8.14 -2.38 -0.02 4.21 15 27 H 0.07 2.95 8.04 -2.38 -0.02 2.93 15 28 H 0.26 15.02 8.31 -92.71 -0.77 14.25 15 Total: -1.00 -64.84 240.63 3.39 -61.45 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 1.11 Total: 7.86 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 2.67 Total: -18.53 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: 0.28 Total: -54.55 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -2.70 Total: -41.62 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -64.84 3.39 -61.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258624748.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.112 kcal (2) G-P(sol) polarization free energy of solvation -64.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds