Wall clock time and date at job start Mon Mar 30 2020 02:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 H 1.08999 * 109.62550 * 59.29864 * 4 2 1 6 6 O 1.43750 * 109.62995 * 298.90302 * 4 2 1 7 7 C 1.44584 * 104.91945 * 215.71143 * 6 4 2 8 8 C 1.54916 * 101.63757 * 36.27013 * 7 6 4 9 9 H 1.08996 * 110.69509 * 82.75684 * 8 7 6 10 10 C 1.50695 * 110.84124 * 205.89306 * 8 7 6 11 11 H 1.08007 * 120.00192 * 355.19180 * 10 8 7 12 12 C 1.37880 * 119.99856 * 175.19533 * 10 8 7 13 13 N 1.31518 * 119.99621 * 179.97438 * 12 10 8 14 14 Si 1.86798 * 119.99972 * 359.97438 * 12 10 8 15 15 H 1.48503 * 109.46794 * 90.00002 * 14 12 10 16 16 H 1.48497 * 109.46823 * 209.99775 * 14 12 10 17 17 H 1.48498 * 109.47108 * 330.00147 * 14 12 10 18 18 O 1.43364 * 109.63316 * 179.69237 * 4 2 1 19 19 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 23 23 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 24 24 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 26 26 H 1.09003 * 111.08414 * 278.15762 * 7 6 4 27 27 H 1.09002 * 110.98027 * 154.33188 * 7 6 4 28 28 H 0.97006 * 119.99506 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6678 -1.7458 1.2580 6 8 1.5840 -0.0316 2.4252 7 6 2.6688 -0.1547 3.3730 8 6 3.9063 -0.0531 2.4466 9 1 4.1448 0.9893 2.2354 10 6 5.0917 -0.7556 3.0566 11 1 5.0202 -1.1717 4.0507 12 6 6.2677 -0.8673 2.3455 13 7 7.3025 -1.4800 2.8780 14 14 6.3913 -0.1483 0.6259 15 1 6.8655 1.2565 0.7097 16 1 7.3512 -0.9477 -0.1771 17 1 5.0554 -0.1820 -0.0219 18 8 3.4736 -0.7297 1.2491 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.6768 1.9562 0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 2.6390 -1.1191 3.8801 27 1 2.6524 0.6633 4.0933 28 1 8.1300 -1.5583 2.3779 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258846533.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:46 Heat of formation + Delta-G solvation = -101.479554 kcal Electronic energy + Delta-G solvation = -12167.786112 eV Core-core repulsion = 9990.710617 eV Total energy + Delta-G solvation = -2177.075495 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.53161 -34.66150 -34.06770 -32.47069 -29.32894 -26.82252 -25.06793 -24.18260 -20.94058 -19.69126 -17.07007 -16.12066 -15.74372 -15.44560 -14.14305 -13.64500 -13.60977 -12.94385 -12.55605 -12.52391 -11.99984 -11.81936 -11.68091 -11.18473 -10.78002 -10.70846 -10.51646 -10.27043 -9.81241 -9.56001 -9.16944 -8.64833 -8.34315 -6.19326 -4.30201 3.33766 3.39576 3.64270 4.40475 4.46691 4.79720 5.24708 5.30254 5.39189 5.54584 5.87834 5.91241 5.92887 6.02083 6.11879 6.21773 6.22918 6.27585 6.38689 6.53958 6.63193 6.75841 7.09627 7.54061 8.15783 8.32043 8.79163 9.43261 10.90736 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.053235 B = 0.015346 C = 0.013000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.839024 B = 1824.100746 C = 2153.254090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C -0.141 4.141 4 C 0.229 3.771 5 H 0.063 0.937 6 O -0.395 6.395 7 C 0.032 3.968 8 C 0.150 3.850 9 H 0.040 0.960 10 C -0.532 4.532 11 H 0.081 0.919 12 C 0.087 3.913 13 N -0.888 5.888 14 Si 0.868 3.132 15 H -0.282 1.282 16 H -0.289 1.289 17 H -0.221 1.221 18 O -0.382 6.382 19 H 0.050 0.950 20 H 0.061 0.939 21 H 0.050 0.950 22 H 0.078 0.922 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.055 3.715 -4.832 11.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.127 4.127 3 C -0.198 4.198 4 C 0.133 3.867 5 H 0.080 0.920 6 O -0.316 6.316 7 C -0.044 4.044 8 C 0.095 3.905 9 H 0.058 0.942 10 C -0.569 4.569 11 H 0.099 0.901 12 C -0.118 4.118 13 N -0.524 5.524 14 Si 0.694 3.306 15 H -0.209 1.209 16 H -0.216 1.216 17 H -0.144 1.144 18 O -0.304 6.304 19 H 0.070 0.930 20 H 0.080 0.920 21 H 0.069 0.931 22 H 0.096 0.904 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.109 0.891 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.955 3.674 -4.983 11.724 hybrid contribution 0.343 0.172 -0.692 0.791 sum -9.613 3.846 -5.675 11.807 Atomic orbital electron populations 1.21712 0.94909 1.01385 1.01695 1.21544 0.95712 0.97614 0.97827 1.21705 1.01769 0.95301 1.01028 1.23836 0.83359 0.93823 0.85645 0.92000 1.88982 1.40573 1.77210 1.24824 1.24286 0.85251 1.01838 0.93035 1.21684 0.93599 0.94158 0.81037 0.94215 1.20913 0.93393 1.39578 1.03001 0.90062 1.25013 0.95067 0.93415 0.98312 1.69918 1.03038 1.41181 1.38298 0.87006 0.80309 0.78502 0.84796 1.20881 1.21561 1.14412 1.89273 1.16243 1.79359 1.45574 0.93047 0.92003 0.93066 0.90401 0.92290 0.92173 0.93533 0.91405 0.89092 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.06 37.16 0.34 -1.59 15 2 C -0.11 -1.81 3.03 -90.62 -0.27 -2.09 15 3 C -0.14 -2.33 8.90 37.15 0.33 -2.00 15 4 C 0.23 4.56 3.66 37.16 0.14 4.69 15 5 H 0.06 1.19 8.14 -51.93 -0.42 0.77 15 6 O -0.39 -7.85 10.01 -59.05 -0.59 -8.44 15 7 C 0.03 0.66 7.37 38.17 0.28 0.94 15 8 C 0.15 3.62 2.88 -26.87 -0.08 3.55 15 9 H 0.04 0.96 7.69 -51.93 -0.40 0.56 15 10 C -0.53 -15.01 9.42 -34.44 -0.32 -15.33 15 11 H 0.08 2.42 8.03 -52.48 -0.42 2.00 15 12 C 0.09 2.53 5.47 -17.82 -0.10 2.43 15 13 N -0.89 -27.03 13.96 55.43 0.77 -26.26 15 14 Si 0.87 21.76 27.11 -169.99 -4.61 17.15 15 15 H -0.28 -6.95 7.11 56.52 0.40 -6.55 15 16 H -0.29 -7.26 7.11 56.52 0.40 -6.86 15 17 H -0.22 -5.40 5.37 56.52 0.30 -5.10 15 18 O -0.38 -9.12 7.29 -59.05 -0.43 -9.55 15 19 H 0.05 0.61 8.14 -51.93 -0.42 0.19 15 20 H 0.06 0.88 7.72 -51.93 -0.40 0.48 15 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 15 22 H 0.08 1.27 8.14 -51.93 -0.42 0.85 15 23 H 0.06 0.98 7.66 -51.93 -0.40 0.58 15 24 H 0.06 1.12 7.70 -51.93 -0.40 0.72 15 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 15 26 H 0.07 1.40 8.04 -51.93 -0.42 0.98 15 27 H 0.09 1.66 8.14 -51.93 -0.42 1.24 15 28 H 0.27 7.61 8.31 -40.82 -0.34 7.27 15 LS Contribution 231.74 15.07 3.49 3.49 Total: -1.00 -30.13 231.74 -5.26 -35.39 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -4.21 Total: -2.39 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 0.31 Total: -9.39 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.77 Total: -26.26 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -1.02 Total: -17.98 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.61 Total: 17.15 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -30.13 -5.26 -35.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258846533.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.091 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds