Wall clock time and date at job start Mon Mar 30 2020 02:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 H 1.08999 * 109.62550 * 59.29864 * 4 2 1 6 6 O 1.43750 * 109.62995 * 298.90302 * 4 2 1 7 7 C 1.44584 * 104.91945 * 215.71143 * 6 4 2 8 8 C 1.54916 * 101.63757 * 36.27013 * 7 6 4 9 9 H 1.08996 * 110.69509 * 82.75684 * 8 7 6 10 10 C 1.50695 * 110.84124 * 205.89306 * 8 7 6 11 11 H 1.08007 * 120.00192 * 355.19180 * 10 8 7 12 12 C 1.37880 * 119.99856 * 175.19533 * 10 8 7 13 13 N 1.31518 * 119.99621 * 179.97438 * 12 10 8 14 14 Si 1.86798 * 119.99972 * 359.97438 * 12 10 8 15 15 H 1.48503 * 109.46794 * 90.00002 * 14 12 10 16 16 H 1.48497 * 109.46823 * 209.99775 * 14 12 10 17 17 H 1.48498 * 109.47108 * 330.00147 * 14 12 10 18 18 O 1.43364 * 109.63316 * 179.69237 * 4 2 1 19 19 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 23 23 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 24 24 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 26 26 H 1.09003 * 111.08414 * 278.15762 * 7 6 4 27 27 H 1.09002 * 110.98027 * 154.33188 * 7 6 4 28 28 H 0.97006 * 119.99506 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6678 -1.7458 1.2580 6 8 1.5840 -0.0316 2.4252 7 6 2.6688 -0.1547 3.3730 8 6 3.9063 -0.0531 2.4466 9 1 4.1448 0.9893 2.2354 10 6 5.0917 -0.7556 3.0566 11 1 5.0202 -1.1717 4.0507 12 6 6.2677 -0.8673 2.3455 13 7 7.3025 -1.4800 2.8780 14 14 6.3913 -0.1483 0.6259 15 1 6.8655 1.2565 0.7097 16 1 7.3512 -0.9477 -0.1771 17 1 5.0554 -0.1820 -0.0219 18 8 3.4736 -0.7297 1.2491 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.6768 1.9562 0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 2.6390 -1.1191 3.8801 27 1 2.6524 0.6633 4.0933 28 1 8.1300 -1.5583 2.3779 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258846533.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:46 Heat of formation + Delta-G solvation = -121.457099 kcal Electronic energy + Delta-G solvation = -12168.652404 eV Core-core repulsion = 9990.710617 eV Total energy + Delta-G solvation = -2177.941787 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.20019 -36.16357 -35.70750 -34.57768 -31.19820 -28.01974 -26.97455 -25.71884 -22.84824 -21.07498 -19.18713 -17.83705 -17.44891 -17.00336 -16.06763 -15.28085 -15.05882 -14.68332 -14.40601 -14.12195 -13.49813 -13.38275 -12.94653 -12.86662 -12.46057 -12.36662 -12.03841 -11.77131 -11.66855 -11.45486 -10.90224 -10.79991 -10.09926 -8.41376 -6.56614 1.34746 1.37110 1.65906 2.38095 2.71215 2.99014 3.43903 3.99126 4.00635 4.10545 4.20815 4.30395 4.52866 4.64310 4.78403 4.81589 4.86982 5.01848 5.06543 5.11804 5.25443 5.44138 5.47153 5.53290 6.06837 6.41665 6.58945 7.20755 8.72111 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.053235 B = 0.015346 C = 0.013000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.839024 B = 1824.100746 C = 2153.254090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.108 4.108 3 C -0.139 4.139 4 C 0.218 3.782 5 H 0.069 0.931 6 O -0.387 6.387 7 C 0.038 3.962 8 C 0.151 3.849 9 H 0.044 0.956 10 C -0.541 4.541 11 H 0.050 0.950 12 C 0.033 3.967 13 N -0.933 5.933 14 Si 0.930 3.070 15 H -0.273 1.273 16 H -0.290 1.290 17 H -0.211 1.211 18 O -0.403 6.403 19 H 0.075 0.925 20 H 0.055 0.945 21 H 0.059 0.941 22 H 0.083 0.917 23 H 0.054 0.946 24 H 0.035 0.965 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.117 0.883 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.739 4.699 -6.359 14.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.127 4.127 3 C -0.196 4.196 4 C 0.123 3.877 5 H 0.086 0.914 6 O -0.308 6.308 7 C -0.038 4.038 8 C 0.095 3.905 9 H 0.061 0.939 10 C -0.578 4.578 11 H 0.068 0.932 12 C -0.168 4.168 13 N -0.572 5.572 14 Si 0.754 3.246 15 H -0.199 1.199 16 H -0.216 1.216 17 H -0.134 1.134 18 O -0.325 6.325 19 H 0.094 0.906 20 H 0.074 0.926 21 H 0.078 0.922 22 H 0.101 0.899 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.134 0.866 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.663 4.662 -6.505 14.145 hybrid contribution 0.809 -0.179 -0.156 0.844 sum -10.854 4.483 -6.661 13.500 Atomic orbital electron populations 1.21660 0.92353 1.02336 1.02599 1.21589 0.97783 0.97266 0.96027 1.21694 1.00152 0.95496 1.02294 1.24217 0.81432 0.95001 0.87071 0.91416 1.88989 1.39940 1.77161 1.24702 1.24205 0.83927 1.02730 0.92923 1.21504 0.93535 0.93419 0.81998 0.93861 1.21178 0.95319 1.39149 1.02143 0.93192 1.25877 0.94768 0.93872 1.02289 1.70034 1.03832 1.43189 1.40099 0.86039 0.80571 0.77987 0.80034 1.19859 1.21605 1.13351 1.89171 1.18856 1.79516 1.44999 0.90623 0.92612 0.92163 0.89868 0.92681 0.94612 0.90679 0.91909 0.86552 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 9.06 71.98 0.65 -2.48 15 2 C -0.11 -3.27 3.03 -10.79 -0.03 -3.31 15 3 C -0.14 -4.19 8.90 71.98 0.64 -3.55 15 4 C 0.22 8.20 3.66 71.98 0.26 8.46 15 5 H 0.07 2.46 8.14 -2.39 -0.02 2.44 15 6 O -0.39 -14.50 10.01 -126.20 -1.26 -15.76 15 7 C 0.04 1.53 7.37 72.64 0.54 2.06 15 8 C 0.15 7.15 2.88 30.50 0.09 7.24 15 9 H 0.04 2.04 7.69 -2.39 -0.02 2.02 15 10 C -0.54 -30.92 9.42 25.60 0.24 -30.68 15 11 H 0.05 3.08 8.03 -2.91 -0.02 3.06 15 12 C 0.03 1.91 5.47 84.65 0.46 2.38 15 13 N -0.93 -58.00 13.96 21.45 0.30 -57.70 15 14 Si 0.93 44.97 27.11 68.60 1.86 46.83 15 15 H -0.27 -12.66 7.11 99.48 0.71 -11.96 15 16 H -0.29 -13.90 7.11 99.48 0.71 -13.19 15 17 H -0.21 -9.78 5.37 99.48 0.53 -9.25 15 18 O -0.40 -18.64 7.29 -126.20 -0.92 -19.56 15 19 H 0.07 1.45 8.14 -2.39 -0.02 1.43 15 20 H 0.05 1.40 7.72 -2.39 -0.02 1.38 15 21 H 0.06 1.32 8.14 -2.38 -0.02 1.30 15 22 H 0.08 2.45 8.14 -2.39 -0.02 2.43 15 23 H 0.05 1.68 7.66 -2.39 -0.02 1.66 15 24 H 0.03 1.23 7.70 -2.39 -0.02 1.22 15 25 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 26 H 0.06 2.56 8.04 -2.39 -0.02 2.54 15 27 H 0.12 4.02 8.14 -2.39 -0.02 4.00 15 28 H 0.27 15.69 8.31 -92.70 -0.77 14.91 15 Total: -1.00 -64.07 231.74 3.77 -60.30 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: 0.95 Total: 5.77 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 2.85 Total: -19.88 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.30 Total: -57.70 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -2.18 Total: -35.32 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.86 Total: 46.83 kcal Total: -64.07 3.77 -60.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258846533.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.160 kcal (2) G-P(sol) polarization free energy of solvation -64.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds