Wall clock time and date at job start Mon Mar 30 2020 02:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47254 * 2 1 4 4 C 1.53000 * 109.47240 * 120.00001 * 2 1 3 5 5 H 1.09006 * 110.35851 * 60.86918 * 4 2 1 6 6 O 1.44401 * 110.40603 * 298.54594 * 4 2 1 7 7 C 1.44281 * 104.61503 * 201.87023 * 6 4 2 8 8 C 1.54179 * 104.94019 * 23.63870 * 7 6 4 9 9 H 1.09002 * 110.34859 * 241.13464 * 8 7 6 10 10 C 1.50696 * 110.34649 * 118.97252 * 8 7 6 11 11 H 1.07996 * 120.00046 * 1.48453 * 10 8 7 12 12 C 1.37876 * 120.00028 * 181.48748 * 10 8 7 13 13 N 1.31521 * 120.00185 * 179.97438 * 12 10 8 14 14 Si 1.86799 * 120.00188 * 359.97438 * 12 10 8 15 15 H 1.48502 * 109.46963 * 90.00104 * 14 12 10 16 16 H 1.48500 * 109.47480 * 210.00266 * 14 12 10 17 17 H 1.48504 * 109.46891 * 330.00493 * 14 12 10 18 18 O 1.44291 * 105.02902 * 0.05347 * 8 7 6 19 19 H 1.08998 * 109.46759 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.46538 * 299.99980 * 1 2 3 21 21 H 1.08999 * 109.46990 * 59.99832 * 1 2 3 22 22 H 1.08996 * 109.47012 * 239.99818 * 2 1 3 23 23 H 1.08996 * 109.47201 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.47260 * 300.00003 * 3 2 1 25 25 H 1.09005 * 109.47060 * 60.00032 * 3 2 1 26 26 H 1.09003 * 110.35004 * 264.77533 * 7 6 4 27 27 H 1.09003 * 110.44037 * 142.55034 * 7 6 4 28 28 H 0.96995 * 120.00231 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6974 -1.7560 1.2561 6 8 1.5981 -0.0368 2.4415 7 6 2.5258 -0.4530 3.4652 8 6 3.7963 -0.8771 2.7017 9 1 4.0154 -1.9290 2.8851 10 6 4.9655 -0.0199 3.1131 11 1 4.8370 0.7430 3.8666 12 6 6.1992 -0.2096 2.5275 13 7 7.2195 0.5388 2.8862 14 14 6.4217 -1.5296 1.2245 15 1 6.1505 -0.9521 -0.1164 16 1 7.8151 -2.0410 1.2708 17 1 5.4761 -2.6450 1.4835 18 8 3.4842 -0.6650 1.3090 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3632 0.5139 0.8901 21 1 -0.3633 0.5139 -0.8900 22 1 1.8933 -0.5138 -0.8899 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 2.1202 -1.2965 4.0240 27 1 2.7469 0.3755 4.1382 28 1 8.0875 0.4051 2.4745 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258846536.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:47 Heat of formation + Delta-G solvation = -103.041942 kcal Electronic energy + Delta-G solvation = -12117.987781 eV Core-core repulsion = 9940.844535 eV Total energy + Delta-G solvation = -2177.143246 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.41180 -34.78249 -33.97500 -32.47705 -29.30818 -26.74152 -24.99724 -24.32804 -20.90468 -19.52346 -17.41097 -15.93556 -15.68832 -14.99579 -14.33676 -13.95085 -13.66398 -13.11386 -12.57221 -12.32141 -11.86800 -11.73812 -11.59681 -10.93436 -10.86475 -10.68760 -10.47460 -10.20780 -9.91403 -9.64521 -9.11386 -8.71636 -8.57695 -6.18134 -4.28478 3.35565 3.40833 3.49991 4.40454 4.49766 4.66225 5.22457 5.27371 5.41859 5.55566 5.73943 5.88185 5.93751 5.97359 6.09888 6.19996 6.30408 6.35082 6.43343 6.68358 6.80394 6.92167 7.00010 7.50004 8.02589 8.31930 8.80533 9.43229 10.92053 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.050687 B = 0.014553 C = 0.013406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.278135 B = 1923.530771 C = 2088.184142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.137 4.137 4 C 0.224 3.776 5 H 0.053 0.947 6 O -0.386 6.386 7 C 0.034 3.966 8 C 0.138 3.862 9 H 0.043 0.957 10 C -0.523 4.523 11 H 0.082 0.918 12 C 0.085 3.915 13 N -0.888 5.888 14 Si 0.900 3.100 15 H -0.272 1.272 16 H -0.295 1.295 17 H -0.268 1.268 18 O -0.384 6.384 19 H 0.049 0.951 20 H 0.062 0.938 21 H 0.054 0.946 22 H 0.078 0.922 23 H 0.067 0.933 24 H 0.043 0.957 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.092 0.908 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.052 -2.952 -4.350 11.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 C -0.195 4.195 4 C 0.129 3.871 5 H 0.070 0.930 6 O -0.307 6.307 7 C -0.043 4.043 8 C 0.083 3.917 9 H 0.060 0.940 10 C -0.559 4.559 11 H 0.100 0.900 12 C -0.120 4.120 13 N -0.525 5.525 14 Si 0.728 3.272 15 H -0.198 1.198 16 H -0.222 1.222 17 H -0.193 1.193 18 O -0.305 6.305 19 H 0.068 0.932 20 H 0.082 0.918 21 H 0.073 0.927 22 H 0.096 0.904 23 H 0.087 0.913 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.111 0.889 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.900 -2.730 -4.523 11.221 hybrid contribution 0.275 -0.857 -0.519 1.039 sum -9.625 -3.587 -5.042 11.442 Atomic orbital electron populations 1.21735 0.94680 1.01355 1.02036 1.21165 0.95583 0.97986 0.96051 1.21647 1.02551 0.94422 1.00842 1.24268 0.82393 0.93627 0.86851 0.92974 1.89082 1.52125 1.69935 1.19607 1.23986 0.88889 0.99809 0.91584 1.21662 0.94504 0.97403 0.78163 0.93975 1.20977 0.91019 1.20476 1.23467 0.89963 1.25038 0.95533 0.95788 0.95629 1.69916 1.01278 1.39063 1.42232 0.86437 0.76004 0.82110 0.82666 1.19802 1.22225 1.19251 1.89419 1.18415 1.93108 1.29603 0.93155 0.91847 0.92688 0.90353 0.91344 0.93772 0.92122 0.93155 0.88947 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.07 37.16 0.34 -1.59 15 2 C -0.09 -1.51 3.09 -90.62 -0.28 -1.79 15 3 C -0.14 -2.42 8.88 37.16 0.33 -2.10 15 4 C 0.22 4.47 3.48 37.16 0.13 4.60 15 5 H 0.05 0.96 8.14 -51.93 -0.42 0.54 15 6 O -0.39 -8.01 10.25 -59.40 -0.61 -8.62 15 7 C 0.03 0.71 7.54 37.77 0.28 1.00 15 8 C 0.14 3.39 2.79 -27.27 -0.08 3.31 15 9 H 0.04 1.02 7.18 -51.93 -0.37 0.65 15 10 C -0.52 -14.92 9.39 -34.44 -0.32 -15.25 15 11 H 0.08 2.48 7.61 -52.49 -0.40 2.08 15 12 C 0.09 2.49 5.47 -17.82 -0.10 2.40 15 13 N -0.89 -27.10 13.96 55.43 0.77 -26.33 15 14 Si 0.90 22.93 26.39 -169.99 -4.49 18.45 15 15 H -0.27 -7.02 7.11 56.52 0.40 -6.62 15 16 H -0.30 -7.33 7.11 56.52 0.40 -6.93 15 17 H -0.27 -6.60 6.53 56.52 0.37 -6.23 15 18 O -0.38 -9.33 8.45 -59.40 -0.50 -9.83 15 19 H 0.05 0.62 8.14 -51.93 -0.42 0.20 15 20 H 0.06 0.91 7.77 -51.93 -0.40 0.51 15 21 H 0.05 0.65 8.14 -51.93 -0.42 0.22 15 22 H 0.08 1.25 8.14 -51.93 -0.42 0.83 15 23 H 0.07 1.40 7.64 -51.93 -0.40 1.00 15 24 H 0.04 0.65 8.14 -51.93 -0.42 0.22 15 25 H 0.06 1.11 7.69 -51.93 -0.40 0.71 15 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 27 H 0.09 1.96 7.43 -51.93 -0.39 1.57 15 28 H 0.27 7.62 8.31 -40.82 -0.34 7.28 15 LS Contribution 231.96 15.07 3.50 3.50 Total: -1.00 -30.63 231.96 -5.08 -35.71 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: -4.06 Total: -3.46 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 0.30 Total: -9.41 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.77 Total: -26.33 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -1.11 Total: -18.45 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.49 Total: 18.45 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -30.63 -5.08 -35.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258846536.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.330 kcal (2) G-P(sol) polarization free energy of solvation -30.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds