Wall clock time and date at job start Mon Mar 30 2020 02:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47159 * 2 1 4 4 C 1.53002 * 109.47119 * 120.00351 * 2 1 3 5 5 H 1.09001 * 109.62756 * 300.38985 * 4 2 1 6 6 O 1.43368 * 109.50924 * 60.70877 * 4 2 1 7 7 C 1.44192 * 107.28876 * 120.47345 * 6 4 2 8 8 C 1.54917 * 103.07620 * 21.43560 * 7 6 4 9 9 H 1.09001 * 111.00687 * 82.55899 * 8 7 6 10 10 C 1.50694 * 110.97689 * 206.32925 * 8 7 6 11 11 H 1.08000 * 120.00563 * 353.78826 * 10 8 7 12 12 C 1.37885 * 119.99902 * 173.78989 * 10 8 7 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 O 1.43749 * 109.62956 * 179.97438 * 4 2 1 19 19 H 1.09003 * 109.47028 * 299.99581 * 1 2 3 20 20 H 1.08997 * 109.47335 * 59.99909 * 1 2 3 21 21 H 1.08996 * 109.47164 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47028 * 240.00419 * 2 1 3 23 23 H 1.08997 * 109.47072 * 300.00252 * 3 2 1 24 24 H 1.09003 * 109.46808 * 60.00284 * 3 2 1 25 25 H 1.09003 * 109.46965 * 180.02562 * 3 2 1 26 26 H 1.08997 * 110.69460 * 263.03798 * 7 6 4 27 27 H 1.09003 * 110.69417 * 139.83259 * 7 6 4 28 28 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6724 -0.2136 2.1409 6 8 1.5763 -2.0779 1.2416 7 6 2.7403 -2.9288 1.2564 8 6 3.8446 -2.0022 1.8237 9 1 3.8055 -1.9689 2.9125 10 6 5.2079 -2.4340 1.3484 11 1 5.3182 -3.3467 0.7818 12 6 6.3145 -1.6637 1.6370 13 7 6.1801 -0.5519 2.3266 14 14 8.0045 -2.1994 1.0484 15 1 9.0185 -1.2060 1.4850 16 1 8.3316 -3.5278 1.6258 17 1 8.0068 -2.2896 -0.4338 18 8 3.4775 -0.7238 1.2524 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.6766 1.9563 -0.8899 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4424 -0.0005 26 1 2.9919 -3.2549 0.2473 27 1 2.5826 -3.7858 1.9112 28 1 6.9587 -0.0103 2.5299 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258846537.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:49 Heat of formation + Delta-G solvation = -127.935380 kcal Electronic energy + Delta-G solvation = -11969.878720 eV Core-core repulsion = 9791.656014 eV Total energy + Delta-G solvation = -2178.222706 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.99023 -36.20309 -35.70169 -34.46417 -30.84918 -27.98109 -26.97744 -25.33944 -23.13297 -21.19109 -18.88019 -18.01793 -17.18462 -16.59814 -15.96966 -15.80305 -14.72815 -14.51999 -14.24414 -13.87722 -13.48589 -13.15038 -12.97377 -12.80054 -12.71188 -12.36787 -12.14105 -11.86892 -11.78441 -11.24256 -10.87818 -10.61233 -10.16131 -8.24732 -6.47906 1.41354 1.44678 1.52590 2.36563 2.79409 3.06157 3.50383 3.95311 4.10199 4.19857 4.32971 4.37513 4.57236 4.59591 4.79559 4.79992 4.92784 4.96991 5.11464 5.18486 5.34922 5.43842 5.50364 5.61998 6.00593 6.47800 6.74546 7.28662 8.84298 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.057932 B = 0.012091 C = 0.010839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.211203 B = 2315.144055 C = 2582.567429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.103 4.103 3 C -0.133 4.133 4 C 0.217 3.783 5 H 0.060 0.940 6 O -0.404 6.404 7 C 0.035 3.965 8 C 0.173 3.827 9 H 0.010 0.990 10 C -0.559 4.559 11 H 0.077 0.923 12 C 0.024 3.976 13 N -0.901 5.901 14 Si 0.972 3.028 15 H -0.282 1.282 16 H -0.260 1.260 17 H -0.269 1.269 18 O -0.384 6.384 19 H 0.060 0.940 20 H 0.077 0.923 21 H 0.054 0.946 22 H 0.061 0.939 23 H 0.079 0.921 24 H 0.058 0.942 25 H 0.034 0.966 26 H 0.066 0.934 27 H 0.103 0.897 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.872 0.232 -3.701 7.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.122 4.122 3 C -0.190 4.190 4 C 0.121 3.879 5 H 0.077 0.923 6 O -0.326 6.326 7 C -0.041 4.041 8 C 0.118 3.882 9 H 0.028 0.972 10 C -0.596 4.596 11 H 0.095 0.905 12 C -0.179 4.179 13 N -0.538 5.538 14 Si 0.795 3.205 15 H -0.207 1.207 16 H -0.184 1.184 17 H -0.193 1.193 18 O -0.305 6.305 19 H 0.079 0.921 20 H 0.096 0.904 21 H 0.073 0.927 22 H 0.079 0.921 23 H 0.098 0.902 24 H 0.077 0.923 25 H 0.053 0.947 26 H 0.084 0.916 27 H 0.121 0.879 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.868 0.495 -3.692 7.813 hybrid contribution 1.020 -0.132 0.131 1.036 sum -5.849 0.363 -3.561 6.857 Atomic orbital electron populations 1.21654 0.92114 1.02179 1.02754 1.21484 0.97784 0.96704 0.96247 1.21629 1.00327 0.94526 1.02526 1.24181 0.82407 0.83796 0.97494 0.92301 1.88660 1.31156 1.17017 1.95789 1.24225 0.84057 0.94447 1.01407 1.21384 0.94564 0.79327 0.92974 0.97205 1.21246 0.90749 1.09297 1.38331 0.90512 1.26032 1.03854 0.94284 0.93758 1.70167 1.31655 1.14156 1.37784 0.85413 0.77581 0.78498 0.78961 1.20714 1.18437 1.19344 1.89491 1.17582 1.39916 1.83525 0.92116 0.90362 0.92715 0.92062 0.90181 0.92298 0.94712 0.91556 0.87851 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 9.05 71.98 0.65 -2.93 15 2 C -0.10 -3.69 2.94 -10.79 -0.03 -3.72 15 3 C -0.13 -4.40 9.05 71.98 0.65 -3.75 15 4 C 0.22 9.50 3.50 71.98 0.25 9.75 15 5 H 0.06 2.54 8.14 -2.39 -0.02 2.52 15 6 O -0.40 -17.42 10.57 -126.22 -1.33 -18.76 15 7 C 0.03 1.53 7.51 72.64 0.55 2.07 15 8 C 0.17 9.28 3.35 30.50 0.10 9.38 15 9 H 0.01 0.59 8.14 -2.39 -0.02 0.57 15 10 C -0.56 -31.44 8.85 25.60 0.23 -31.21 15 11 H 0.08 4.05 7.79 -2.91 -0.02 4.03 15 12 C 0.02 1.33 5.43 84.66 0.46 1.79 15 13 N -0.90 -54.18 12.96 21.45 0.28 -53.90 15 14 Si 0.97 43.20 29.54 68.60 2.03 45.23 15 15 H -0.28 -12.26 7.11 99.48 0.71 -11.56 15 16 H -0.26 -10.88 7.11 99.48 0.71 -10.18 15 17 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 18 O -0.38 -20.83 9.97 -126.22 -1.26 -22.09 15 19 H 0.06 1.55 8.14 -2.39 -0.02 1.54 15 20 H 0.08 1.75 8.14 -2.39 -0.02 1.73 15 21 H 0.05 1.57 7.70 -2.39 -0.02 1.55 15 22 H 0.06 2.32 8.14 -2.39 -0.02 2.30 15 23 H 0.08 2.12 8.14 -2.39 -0.02 2.10 15 24 H 0.06 1.81 8.14 -2.39 -0.02 1.79 15 25 H 0.03 1.37 7.69 -2.39 -0.02 1.35 15 26 H 0.07 2.85 8.03 -2.39 -0.02 2.83 15 27 H 0.10 3.96 8.14 -2.39 -0.02 3.94 15 28 H 0.27 15.00 8.31 -92.71 -0.77 14.23 15 Total: -1.00 -63.96 238.69 3.69 -60.28 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 1.12 Total: 7.86 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 2.86 Total: -18.62 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.28 Total: -53.90 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -2.59 Total: -40.85 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -63.96 3.69 -60.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258846537.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.660 kcal (2) G-P(sol) polarization free energy of solvation -63.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds