Wall clock time and date at job start Mon Mar 30 2020 01:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.43197 * 109.64108 * 299.79997 * 9 7 2 11 11 C 1.45131 * 113.48578 * 180.80332 * 10 9 7 12 12 C 1.53863 * 106.91429 * 359.21700 * 11 10 9 13 13 C 1.53844 * 107.60440 * 58.69265 * 12 11 10 14 14 O 1.43178 * 109.64079 * 180.02562 * 9 7 2 15 15 C 1.53870 * 108.30602 * 302.64466 * 12 11 10 16 16 O 1.43194 * 109.63842 * 60.20187 * 9 7 2 17 17 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 18 18 H 1.09000 * 109.50282 * 240.32845 * 11 10 9 19 19 H 1.09000 * 111.02021 * 118.94948 * 11 10 9 20 20 H 1.09002 * 111.06149 * 180.44035 * 12 11 10 21 21 H 1.09000 * 109.78759 * 181.73305 * 13 12 11 22 22 H 1.09005 * 109.83021 * 60.92695 * 13 12 11 23 23 H 1.08994 * 109.79386 * 177.82403 * 15 12 11 24 24 H 1.09002 * 109.78519 * 298.59816 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.4304 -2.5811 1.1701 11 6 -0.3214 -3.8189 1.2638 12 6 0.0199 -4.6459 0.0121 13 6 1.5412 -4.8744 0.0059 14 8 2.1782 -3.5902 -0.0005 15 6 -0.3299 -3.8085 -1.2305 16 8 0.4296 -2.5805 -1.1706 17 1 -0.4850 0.8401 0.0004 18 1 -1.3884 -3.5964 1.2795 19 1 -0.0476 -4.3758 2.1600 20 1 -0.5186 -5.5937 0.0099 21 1 1.8269 -5.4328 -0.8855 22 1 1.8357 -5.4275 0.8979 23 1 -0.0613 -4.3574 -2.1331 24 1 -1.3971 -3.5867 -1.2376 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259248970.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:05 Heat of formation + Delta-G solvation = -136.331666 kcal Electronic energy + Delta-G solvation = -12336.755418 eV Core-core repulsion = 10022.335527 eV Total energy + Delta-G solvation = -2314.419891 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.90784 -34.44568 -34.09825 -33.26237 -31.60523 -26.42188 -25.15567 -25.05466 -22.52789 -18.00997 -17.19709 -16.82963 -16.76433 -15.31653 -14.46761 -13.89001 -13.85263 -12.67088 -12.50298 -12.21253 -12.07901 -11.29948 -11.14646 -11.12970 -10.90093 -10.71673 -10.25165 -9.60960 -9.00182 -8.77393 -8.63986 -8.62460 -6.14818 -4.34956 3.31771 3.33423 3.37034 4.23499 4.69237 4.81123 4.94478 5.06439 5.07760 5.54896 5.62081 5.64909 6.00134 6.02350 6.16609 6.28829 6.29329 6.40379 7.14957 7.71476 8.24007 8.34330 8.67994 8.89242 9.39233 10.92306 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.068977 B = 0.016008 C = 0.015310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.834683 B = 1748.728470 C = 1828.405774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.086 3.914 3 Si 0.916 3.084 4 H -0.283 1.283 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.501 4.501 8 H 0.086 0.914 9 C 0.517 3.483 10 O -0.367 6.367 11 C 0.053 3.947 12 C -0.202 4.202 13 C 0.062 3.938 14 O -0.402 6.402 15 C 0.052 3.948 16 O -0.364 6.364 17 H 0.265 0.735 18 H 0.061 0.939 19 H 0.060 0.940 20 H 0.097 0.903 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.042 -6.596 0.062 6.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.124 4.124 3 Si 0.742 3.258 4 H -0.209 1.209 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.538 4.538 8 H 0.104 0.896 9 C 0.409 3.591 10 O -0.289 6.289 11 C -0.024 4.024 12 C -0.221 4.221 13 C -0.015 4.015 14 O -0.325 6.325 15 C -0.025 4.025 16 O -0.286 6.286 17 H 0.075 0.925 18 H 0.079 0.921 19 H 0.078 0.922 20 H 0.116 0.884 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.038 -6.143 0.054 6.231 hybrid contribution -0.152 0.025 -0.002 0.154 sum -1.190 -6.118 0.052 6.233 Atomic orbital electron populations 1.70123 1.06174 1.27183 1.43180 1.25106 0.95050 0.99701 0.92566 0.86289 0.79385 0.81047 0.79111 1.20854 1.19586 1.19589 1.20072 0.92796 0.85033 1.55878 0.89621 1.21981 0.77238 0.85140 0.74759 1.89087 1.59402 1.34378 1.46080 1.22934 0.96885 0.87764 0.94853 1.23141 0.98801 1.01266 0.98895 1.22623 0.90403 0.87888 1.00604 1.88408 1.36453 1.13912 1.93722 1.22815 0.96830 0.87927 0.94948 1.89068 1.58428 1.35312 1.45781 0.92481 0.92079 0.92233 0.88446 0.92050 0.92030 0.92490 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.99 12.42 55.43 0.69 -24.30 14 2 C 0.09 2.49 5.35 -17.82 -0.10 2.40 14 3 Si 0.92 21.55 29.54 -169.99 -5.02 16.53 14 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 14 5 H -0.27 -6.23 7.11 56.52 0.40 -5.82 14 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 14 7 C -0.50 -15.13 8.82 -34.44 -0.30 -15.43 14 8 H 0.09 2.51 7.81 -52.49 -0.41 2.10 14 9 C 0.52 14.84 1.37 36.00 0.05 14.89 14 10 O -0.37 -10.31 10.14 -67.48 -0.68 -11.00 14 11 C 0.05 1.12 7.00 37.61 0.26 1.38 14 12 C -0.20 -3.84 3.67 -89.28 -0.33 -4.17 14 13 C 0.06 1.23 6.85 37.60 0.26 1.49 14 14 O -0.40 -10.54 10.65 -67.50 -0.72 -11.26 14 15 C 0.05 1.11 6.90 37.61 0.26 1.37 14 16 O -0.36 -10.23 10.18 -67.48 -0.69 -10.92 14 17 H 0.27 7.39 8.31 -40.82 -0.34 7.05 14 18 H 0.06 1.23 8.14 -51.93 -0.42 0.81 14 19 H 0.06 1.11 8.14 -51.93 -0.42 0.69 14 20 H 0.10 1.42 8.14 -51.93 -0.42 0.99 14 21 H 0.06 1.08 8.14 -51.93 -0.42 0.66 14 22 H 0.06 1.08 8.14 -51.93 -0.42 0.66 14 23 H 0.06 1.08 8.14 -51.93 -0.42 0.65 14 24 H 0.06 1.23 8.14 -51.93 -0.42 0.81 14 LS Contribution 207.33 15.07 3.12 3.12 Total: -1.00 -33.48 207.33 -5.70 -39.18 By element: Atomic # 1 Polarization: -0.80 SS G_CDS: -2.50 Total: -3.31 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 0.10 Total: 1.94 kcal Atomic # 7 Polarization: -24.99 SS G_CDS: 0.69 Total: -24.30 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -2.09 Total: -33.17 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 3.12 Total: 3.12 kcal Total: -33.48 -5.70 -39.18 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259248970.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.149 kcal (2) G-P(sol) polarization free energy of solvation -33.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds