Wall clock time and date at job start Mon Mar 30 2020 01:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 N 1.30071 * 126.20764 * 90.02207 * 10 9 7 12 12 N 1.28657 * 109.56072 * 180.02562 * 11 10 9 13 13 C 1.31146 * 109.31204 * 359.97438 * 12 11 10 14 14 S 1.76198 * 126.38201 * 180.02562 * 13 12 11 15 15 O 1.34637 * 107.23427 * 359.73994 * 13 12 11 16 16 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 17 17 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 18 18 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 19 19 H 1.40997 * 99.99819 * 89.97486 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 7 2.7332 -4.2313 1.0342 12 7 3.5333 -5.1670 0.6605 13 6 3.5682 -5.2102 -0.6497 14 16 4.5170 -6.3218 -1.6339 15 8 2.7390 -4.2511 -1.1027 16 1 -0.4849 0.8401 0.0041 17 1 0.6280 -2.5591 0.8866 18 1 0.6206 -2.5548 -0.8933 19 1 3.5936 -7.3789 -1.7684 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259278731.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:59 Heat of formation + Delta-G solvation = 35.945258 kcal Electronic energy + Delta-G solvation = -9029.045737 eV Core-core repulsion = 7061.308862 eV Total energy + Delta-G solvation = -1967.736875 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.020 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -43.52114 -35.60737 -33.81580 -31.46651 -28.25887 -24.23716 -23.39585 -21.48677 -18.56779 -17.20464 -16.52729 -15.96696 -14.90738 -14.83288 -13.45854 -12.54194 -12.03099 -11.91800 -11.61524 -11.42748 -11.06649 -10.91121 -10.61217 -10.19045 -9.90333 -8.89561 -8.68627 -8.48199 -6.31919 -4.38699 0.81786 1.29306 2.34872 2.94765 3.21063 3.27474 3.32493 3.46110 4.26798 5.01041 5.14226 5.38876 5.69561 6.28400 6.99201 7.05442 7.61065 7.81763 8.61687 8.74693 9.26954 10.78385 Molecular weight = 186.02amu Principal moments of inertia in cm(-1) A = 0.077297 B = 0.009404 C = 0.009058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.154532 B = 2976.843365 C = 3090.492586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.909 3.091 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.528 4.528 8 H 0.063 0.937 9 C 0.100 3.900 10 C 0.250 3.750 11 N -0.318 5.318 12 N -0.226 5.226 13 C 0.079 3.921 14 S 0.030 5.970 15 O -0.213 6.213 16 H 0.269 0.731 17 H 0.075 0.925 18 H 0.057 0.943 19 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.565 -7.899 -3.878 9.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.567 4.567 8 H 0.081 0.919 9 C 0.061 3.939 10 C 0.041 3.959 11 N -0.166 5.166 12 N -0.079 5.079 13 C -0.240 4.240 14 S 0.179 5.821 15 O -0.092 6.092 16 H 0.079 0.921 17 H 0.093 0.907 18 H 0.075 0.925 19 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.284 -8.462 -3.155 10.463 hybrid contribution -0.989 1.086 -0.727 1.639 sum 4.295 -7.376 -3.882 9.377 Atomic orbital electron populations 1.69922 1.06092 1.27808 1.48649 1.24943 0.95037 0.99565 0.94114 0.86299 0.79796 0.81894 0.78441 1.20216 1.20733 1.19493 1.20793 0.93339 0.88667 1.53864 0.91902 1.18342 0.89748 0.84386 1.01401 1.29835 0.94025 0.94168 0.77892 1.74388 1.10180 1.06280 1.25752 1.74849 1.11906 1.12849 1.08295 1.28532 1.02333 0.98991 0.94147 1.86891 1.16458 1.13516 1.65243 1.85213 1.46470 1.38791 1.38772 0.92130 0.90729 0.92474 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.61 13.29 55.43 0.74 -23.87 13 2 C 0.07 1.80 5.46 -17.82 -0.10 1.71 13 3 Si 0.91 20.74 29.54 -169.99 -5.02 15.72 13 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 13 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 13 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 13 7 C -0.53 -14.32 9.09 -34.44 -0.31 -14.63 13 8 H 0.06 1.72 7.74 -52.49 -0.41 1.32 13 9 C 0.10 2.47 5.60 -29.04 -0.16 2.31 13 10 C 0.25 5.81 7.67 -13.03 -0.10 5.71 13 11 N -0.32 -7.45 12.20 32.59 0.40 -7.05 13 12 N -0.23 -4.82 12.27 30.29 0.37 -4.45 13 13 C 0.08 1.52 8.83 52.47 0.46 1.98 13 14 S 0.03 0.39 26.28 -107.50 -2.83 -2.43 13 15 O -0.21 -4.56 10.90 3.53 0.04 -4.52 13 16 H 0.27 7.00 8.31 -40.82 -0.34 6.66 13 17 H 0.07 1.89 8.14 -51.93 -0.42 1.47 13 18 H 0.06 1.41 8.14 -51.93 -0.42 0.99 13 19 H 0.10 1.05 9.55 96.90 0.93 1.97 13 LS Contribution 204.32 15.07 3.08 3.08 Total: -1.00 -28.60 204.32 -2.89 -31.50 By element: Atomic # 1 Polarization: -5.59 SS G_CDS: 0.54 Total: -5.05 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -0.21 Total: -2.92 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 1.51 Total: -35.37 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: 0.04 Total: -4.52 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -2.83 Total: -2.43 kcal Total LS contribution 3.08 Total: 3.08 kcal Total: -28.60 -2.89 -31.50 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259278731.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.442 kcal (2) G-P(sol) polarization free energy of solvation -28.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds