Wall clock time and date at job start Mon Mar 30 2020 01:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 N 1.30071 * 126.20764 * 90.02207 * 10 9 7 12 12 N 1.28657 * 109.56072 * 180.02562 * 11 10 9 13 13 C 1.31146 * 109.31204 * 359.97438 * 12 11 10 14 14 S 1.76198 * 126.38201 * 180.02562 * 13 12 11 15 15 O 1.34637 * 107.23427 * 359.73994 * 13 12 11 16 16 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 17 17 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 18 18 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 19 19 H 1.40997 * 99.99819 * 89.97486 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 7 2.7332 -4.2313 1.0342 12 7 3.5333 -5.1670 0.6605 13 6 3.5682 -5.2102 -0.6497 14 16 4.5170 -6.3218 -1.6339 15 8 2.7390 -4.2511 -1.1027 16 1 -0.4849 0.8401 0.0041 17 1 0.6280 -2.5591 0.8866 18 1 0.6206 -2.5548 -0.8933 19 1 3.5936 -7.3789 -1.7684 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259278731.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:59 Heat of formation + Delta-G solvation = 12.638227 kcal Electronic energy + Delta-G solvation = -9030.056406 eV Core-core repulsion = 7061.308862 eV Total energy + Delta-G solvation = -1968.747544 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.020 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -45.19937 -37.29664 -35.80286 -33.33126 -30.12579 -26.16798 -25.04630 -23.30214 -19.95362 -19.04863 -18.26790 -17.67578 -16.78266 -16.20438 -15.28903 -14.48194 -13.90863 -13.61636 -13.18817 -13.06249 -12.75809 -12.65996 -12.38119 -12.06781 -11.80989 -10.72177 -10.59897 -9.56254 -8.36229 -6.50996 -0.48859 -0.23814 1.02784 1.41666 1.43092 1.45817 1.55407 1.79433 2.36655 2.98304 3.33897 3.77893 4.05155 4.45634 4.98120 5.08319 5.52542 5.79505 6.53292 7.05376 7.18751 8.74589 Molecular weight = 186.02amu Principal moments of inertia in cm(-1) A = 0.077297 B = 0.009404 C = 0.009058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.154532 B = 2976.843365 C = 3090.492586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.023 3.977 3 Si 0.974 3.026 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.550 4.550 8 H 0.053 0.947 9 C 0.109 3.891 10 C 0.235 3.765 11 N -0.334 5.334 12 N -0.252 5.252 13 C 0.096 3.904 14 S 0.063 5.937 15 O -0.218 6.218 16 H 0.275 0.725 17 H 0.062 0.938 18 H 0.052 0.948 19 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.550 -8.275 -4.724 11.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.178 4.178 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.588 4.588 8 H 0.072 0.928 9 C 0.070 3.930 10 C 0.024 3.976 11 N -0.182 5.182 12 N -0.103 5.103 13 C -0.224 4.224 14 S 0.211 5.789 15 O -0.098 6.098 16 H 0.084 0.916 17 H 0.080 0.920 18 H 0.070 0.930 19 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.269 -8.857 -3.985 11.560 hybrid contribution -1.233 1.007 -0.550 1.685 sum 5.035 -7.850 -4.535 10.370 Atomic orbital electron populations 1.70000 1.07357 1.28996 1.48931 1.25771 0.95879 1.02806 0.93366 0.85313 0.78379 0.77744 0.78876 1.19156 1.19777 1.19557 1.21021 0.93122 0.90135 1.54567 0.92847 1.18019 0.89866 0.84622 1.00481 1.29313 0.94976 0.94748 0.78525 1.74308 1.10689 1.06904 1.26338 1.74812 1.12724 1.13153 1.09612 1.29656 1.00235 0.98035 0.94445 1.86876 1.15837 1.12866 1.63290 1.85218 1.46923 1.39342 1.38273 0.91624 0.92040 0.92966 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.89 13.29 21.45 0.28 -50.60 13 2 C 0.02 1.23 5.46 84.66 0.46 1.69 13 3 Si 0.97 42.12 29.54 68.60 2.03 44.15 13 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 13 5 H -0.27 -11.33 7.11 99.48 0.71 -10.63 13 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 13 7 C -0.55 -30.20 9.09 25.60 0.23 -29.97 13 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 13 9 C 0.11 5.52 5.60 29.10 0.16 5.69 13 10 C 0.24 11.04 7.67 88.37 0.68 11.71 13 11 N -0.33 -15.78 12.20 -165.25 -2.02 -17.80 13 12 N -0.25 -10.56 12.27 -172.08 -2.11 -12.67 13 13 C 0.10 3.49 8.83 130.35 1.15 4.64 13 14 S 0.06 1.47 26.28 -56.49 -1.48 -0.02 13 15 O -0.22 -9.17 10.90 -10.29 -0.11 -9.28 13 16 H 0.27 14.21 8.31 -92.71 -0.77 13.44 13 17 H 0.06 3.23 8.14 -2.38 -0.02 3.21 13 18 H 0.05 2.65 8.14 -2.39 -0.02 2.63 13 19 H 0.14 2.24 9.55 73.80 0.70 2.94 13 Total: -1.00 -60.48 204.32 1.27 -59.22 By element: Atomic # 1 Polarization: -8.76 SS G_CDS: 1.99 Total: -6.76 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 2.69 Total: -6.23 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -3.84 Total: -81.07 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.11 Total: -9.28 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -1.48 Total: -0.02 kcal Total: -60.48 1.27 -59.22 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259278731.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.856 kcal (2) G-P(sol) polarization free energy of solvation -60.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds