Wall clock time and date at job start Mon Mar 30 2020 01:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35219 * 127.23492 * 2 1 4 4 Cl 1.73605 * 126.32382 * 359.96895 * 3 2 1 5 5 N 1.35943 * 107.34699 * 180.28210 * 3 2 1 6 6 H 0.97001 * 124.86407 * 179.72532 * 5 3 2 7 7 N 1.28464 * 110.27550 * 359.72575 * 5 3 2 8 8 C 1.32773 * 109.96517 * 359.97438 * 7 5 3 9 9 C 1.41421 * 126.56005 * 179.97438 * 8 7 5 10 10 H 1.08002 * 120.00026 * 188.17126 * 9 8 7 11 11 C 1.39848 * 120.00087 * 8.17499 * 9 8 7 12 12 N 1.30889 * 119.99955 * 191.06205 * 11 9 8 13 13 Si 1.86801 * 119.99818 * 11.05825 * 11 9 8 14 14 H 1.48496 * 109.47566 * 270.00008 * 13 11 9 15 15 H 1.48496 * 109.47006 * 30.00376 * 13 11 9 16 16 H 1.48501 * 109.46722 * 150.00102 * 13 11 9 17 17 H 1.09004 * 109.47082 * 270.16069 * 1 2 3 18 18 H 1.08995 * 109.47790 * 30.16036 * 1 2 3 19 19 H 1.09003 * 109.47283 * 150.16783 * 1 2 3 20 20 H 0.97002 * 119.99990 * 354.79372 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.0766 0.0000 4 17 1.8338 2.7416 -0.0008 5 7 3.6035 0.6141 -0.0064 6 1 4.3957 1.1739 -0.0116 7 7 3.6122 -0.6705 -0.0045 8 6 2.3674 -1.1323 0.0037 9 6 1.9727 -2.4903 0.0076 10 1 0.9322 -2.7506 -0.1186 11 6 2.9298 -3.4962 0.1751 12 7 2.6079 -4.7473 -0.0354 13 14 4.6675 -3.0541 0.6989 14 1 5.4999 -2.8067 -0.5056 15 1 4.6350 -1.8295 1.5382 16 1 5.2489 -4.1748 1.4808 17 1 -0.3633 0.0029 1.0277 18 1 -0.3634 0.8885 -0.5163 19 1 -0.3634 -0.8915 -0.5112 20 1 1.6886 -4.9849 -0.2335 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259463982.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:47 Heat of formation + Delta-G solvation = 21.907741 kcal Electronic energy + Delta-G solvation = -9308.710817 eV Core-core repulsion = 7338.321522 eV Total energy + Delta-G solvation = -1970.389294 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.025 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -42.72800 -37.69418 -35.65334 -33.69302 -31.72959 -27.86800 -27.19762 -22.38906 -20.77966 -19.68880 -18.99457 -16.35004 -16.03990 -15.55544 -14.42537 -14.24560 -13.84076 -13.67991 -13.12322 -12.94945 -12.66184 -12.39345 -12.01572 -11.56589 -11.09472 -10.48935 -9.91441 -9.32225 -9.15196 -6.51373 0.73804 1.15081 1.48386 1.56148 1.97226 2.06608 2.40937 2.82868 3.31507 4.27778 4.41332 4.78816 4.95176 5.00608 5.37381 5.47269 5.67044 6.13489 6.41374 6.63164 6.95560 7.68093 8.22717 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.065455 B = 0.014679 C = 0.012172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.669047 B = 1906.980211 C = 2299.799814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C -0.255 4.255 3 C 0.072 3.928 4 Cl -0.003 7.003 5 N -0.412 5.412 6 H 0.444 0.556 7 N -0.411 5.411 8 C 0.173 3.827 9 C -0.520 4.520 10 H 0.062 0.938 11 C 0.015 3.985 12 N -0.866 5.866 13 Si 1.139 2.861 14 H -0.283 1.283 15 H -0.259 1.259 16 H -0.304 1.304 17 H 0.061 0.939 18 H 0.073 0.927 19 H 0.048 0.952 20 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.138 12.164 0.833 12.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.268 4.268 3 C -0.082 4.082 4 Cl 0.025 6.975 5 N -0.124 5.124 6 H 0.289 0.711 7 N -0.248 5.248 8 C 0.026 3.974 9 C -0.559 4.559 10 H 0.081 0.919 11 C -0.198 4.198 12 N -0.494 5.494 13 Si 0.965 3.035 14 H -0.209 1.209 15 H -0.185 1.185 16 H -0.233 1.233 17 H 0.079 0.921 18 H 0.092 0.908 19 H 0.067 0.933 20 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.362 11.340 1.075 11.633 hybrid contribution -2.249 0.968 -0.478 2.494 sum 0.114 12.307 0.597 12.322 Atomic orbital electron populations 1.19825 0.88120 1.01540 1.01357 1.20285 0.97651 0.90628 1.18237 1.21748 0.87248 0.86665 1.12518 1.98320 1.89855 1.11917 1.97419 1.42986 1.05815 1.04130 1.59430 0.71140 1.73404 1.22407 0.92089 1.36944 1.19392 0.87836 0.94358 0.95829 1.19671 0.96342 0.89441 1.50437 0.91938 1.27993 1.09382 0.92076 0.90312 1.70685 1.21883 1.19761 1.37109 0.82491 0.69514 0.73658 0.77792 1.20903 1.18490 1.23320 0.92052 0.90824 0.93270 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.88 10.12 71.24 0.72 -1.16 14 2 C -0.25 -11.29 6.26 -19.57 -0.12 -11.41 14 3 C 0.07 2.76 7.86 83.36 0.65 3.41 14 4 Cl 0.00 -0.08 29.06 -2.72 -0.08 -0.16 14 5 N -0.41 -16.26 6.86 -49.88 -0.34 -16.60 14 6 H 0.44 13.58 8.96 -219.99 -1.97 11.61 14 7 N -0.41 -20.10 7.51 -51.61 -0.39 -20.49 14 8 C 0.17 9.08 6.46 40.77 0.26 9.35 14 9 C -0.52 -29.75 9.64 23.44 0.23 -29.53 14 10 H 0.06 3.67 7.69 -2.91 -0.02 3.65 14 11 C 0.01 0.85 5.51 85.22 0.47 1.32 14 12 N -0.87 -50.60 13.66 21.81 0.30 -50.30 14 13 Si 1.14 55.60 26.42 68.60 1.81 57.41 14 14 H -0.28 -13.55 7.11 99.48 0.71 -12.85 14 15 H -0.26 -12.39 6.24 99.48 0.62 -11.77 14 16 H -0.30 -14.32 7.11 99.48 0.71 -13.61 14 17 H 0.06 2.12 8.14 -2.39 -0.02 2.10 14 18 H 0.07 2.29 8.04 -2.39 -0.02 2.27 14 19 H 0.05 1.91 7.73 -2.39 -0.02 1.89 14 20 H 0.27 15.67 8.73 -92.71 -0.81 14.86 14 Total: -1.00 -62.68 199.10 2.69 -60.00 By element: Atomic # 1 Polarization: -1.02 SS G_CDS: -0.83 Total: -1.85 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: 2.21 Total: -28.01 kcal Atomic # 7 Polarization: -86.95 SS G_CDS: -0.43 Total: -87.39 kcal Atomic # 14 Polarization: 55.60 SS G_CDS: 1.81 Total: 57.41 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -0.08 Total: -0.16 kcal Total: -62.68 2.69 -60.00 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259463982.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.903 kcal (2) G-P(sol) polarization free energy of solvation -62.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds