Wall clock time and date at job start Mon Mar 30 2020 01:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31028 * 1 3 3 Si 1.86798 * 120.00316 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00380 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99965 * 3 2 1 7 7 C 1.39695 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.41596 * 120.00492 * 359.72034 * 7 2 1 10 10 C 1.39281 * 126.55279 * 359.68849 * 9 7 2 11 11 N 1.34502 * 107.18677 * 179.89389 * 10 9 7 12 12 H 0.97006 * 125.67679 * 180.10351 * 11 10 9 13 13 N 1.39881 * 108.64761 * 0.37303 * 11 10 9 14 14 C 1.30322 * 109.23118 * 359.76223 * 13 11 10 15 15 C 1.50693 * 125.97700 * 180.02562 * 14 13 11 16 16 Cl 1.80299 * 109.46765 * 269.97414 * 15 14 13 17 17 H 0.97000 * 120.00241 * 359.97438 * 1 2 3 18 18 H 1.07999 * 126.40830 * 0.02562 * 10 9 7 19 19 H 1.09005 * 109.47311 * 29.97124 * 15 14 13 20 20 H 1.09000 * 109.47246 * 149.97609 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2444 1.6177 0.0000 4 1 3.0981 1.6964 -1.2125 5 1 1.2793 2.7464 0.0006 6 1 3.0981 1.6962 1.2125 7 6 2.0087 -1.2098 -0.0005 8 1 3.0887 -1.2098 -0.0010 9 6 1.3008 -2.4361 0.0049 10 6 -0.0829 -2.5951 0.0171 11 7 -0.3311 -3.9170 0.0160 12 1 -1.2099 -4.3276 0.0216 13 7 0.8890 -4.6012 0.0117 14 6 1.8652 -3.7378 0.0051 15 6 3.3362 -4.0649 -0.0017 16 17 3.9316 -4.1913 1.6955 17 1 -0.4850 0.8400 0.0004 18 1 -0.8189 -1.8048 0.0239 19 1 3.4951 -5.0138 -0.5141 20 1 3.8814 -3.2762 -0.5202 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259469836.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:16 Heat of formation + Delta-G solvation = 45.444732 kcal Electronic energy + Delta-G solvation = -9220.405469 eV Core-core repulsion = 7251.036815 eV Total energy + Delta-G solvation = -1969.368654 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.025 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -39.30152 -35.16999 -33.41933 -31.33215 -28.68432 -26.52868 -24.70059 -20.04699 -18.52472 -17.15281 -15.80106 -14.40478 -13.90247 -13.48553 -12.92933 -12.51980 -12.37146 -11.47077 -11.28535 -11.12833 -10.46268 -10.06303 -9.69433 -9.62536 -9.27373 -8.99733 -8.07239 -7.16580 -6.44529 -4.03985 2.68208 3.13887 3.20027 3.24144 3.70459 4.11204 4.29218 4.33676 5.53838 5.69831 5.79775 6.10091 6.87550 7.20165 7.45477 7.77069 7.80499 8.42708 8.85708 9.06308 9.11300 9.30393 10.56643 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.038459 B = 0.016257 C = 0.012022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.865055 B = 1721.919866 C = 2328.566530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.058 3.942 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.423 4.423 8 H 0.070 0.930 9 C -0.026 4.026 10 C -0.054 4.054 11 N -0.485 5.485 12 H 0.418 0.582 13 N -0.323 5.323 14 C -0.016 4.016 15 C 0.080 3.920 16 Cl -0.202 7.202 17 H 0.272 0.728 18 H 0.196 0.804 19 H 0.086 0.914 20 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.299 -2.223 -0.579 3.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.151 4.151 3 Si 0.741 3.259 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.458 4.458 8 H 0.088 0.912 9 C -0.036 4.036 10 C -0.199 4.199 11 N -0.196 5.196 12 H 0.258 0.742 13 N -0.152 5.152 14 C -0.180 4.180 15 C 0.016 3.984 16 Cl -0.176 7.176 17 H 0.083 0.917 18 H 0.212 0.788 19 H 0.105 0.895 20 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.956 -3.198 -0.459 3.776 hybrid contribution 0.017 1.531 0.105 1.535 sum 1.973 -1.666 -0.354 2.607 Atomic orbital electron populations 1.69406 1.07133 1.27791 1.43407 1.25546 0.94802 1.00511 0.94250 0.86257 0.79575 0.80719 0.79365 1.19560 1.20867 1.19481 1.18721 0.93613 0.88953 1.44472 0.91166 1.17948 0.90877 0.91401 1.03351 1.24043 0.99062 0.84007 1.12832 1.45656 1.05860 1.05942 1.62136 0.74180 1.76263 0.90197 1.21934 1.26763 1.21782 0.92946 0.93411 1.09840 1.22098 0.90823 1.03211 0.82279 1.98682 1.89655 1.98902 1.30348 0.91718 0.78806 0.89523 0.87930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.99 10.33 55.54 0.57 -21.41 14 2 C 0.06 1.49 5.49 -17.35 -0.10 1.39 14 3 Si 0.91 19.65 29.56 -169.99 -5.02 14.63 14 4 H -0.27 -5.72 7.11 56.52 0.40 -5.31 14 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 14 6 H -0.27 -5.80 7.11 56.52 0.40 -5.39 14 7 C -0.42 -11.30 9.15 -37.76 -0.35 -11.64 14 8 H 0.07 1.79 7.38 -52.48 -0.39 1.41 14 9 C -0.03 -0.69 5.94 -106.83 -0.63 -1.33 14 10 C -0.05 -1.38 10.99 -15.99 -0.18 -1.55 14 11 N -0.48 -10.89 7.29 31.14 0.23 -10.66 14 12 H 0.42 7.60 8.96 -182.76 -1.64 5.96 14 13 N -0.32 -7.68 12.60 33.99 0.43 -7.25 14 14 C -0.02 -0.39 6.66 -81.84 -0.54 -0.93 14 15 C 0.08 1.59 7.01 36.00 0.25 1.84 14 16 Cl -0.20 -3.97 29.13 -51.86 -1.51 -5.48 14 17 H 0.27 6.59 8.30 -40.82 -0.34 6.25 14 18 H 0.20 5.00 5.75 -52.49 -0.30 4.70 14 19 H 0.09 1.49 8.14 -51.93 -0.42 1.07 14 20 H 0.10 1.91 7.62 -51.93 -0.40 1.51 14 LS Contribution 201.62 15.07 3.04 3.04 Total: -1.00 -28.67 201.62 -6.09 -34.76 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -2.28 Total: 4.61 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -1.54 Total: -12.23 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 1.23 Total: -39.33 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 17 Polarization: -3.97 SS G_CDS: -1.51 Total: -5.48 kcal Total LS contribution 3.04 Total: 3.04 kcal Total: -28.67 -6.09 -34.76 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259469836.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.205 kcal (2) G-P(sol) polarization free energy of solvation -28.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds