Wall clock time and date at job start Mon Mar 30 2020 01:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48504 * 109.46488 * 269.99518 * 3 2 1 5 5 H 1.48496 * 109.47033 * 29.99573 * 3 2 1 6 6 H 1.48498 * 109.46932 * 149.99844 * 3 2 1 7 7 C 1.37878 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00205 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99753 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.78606 * 300.70769 * 9 7 2 11 11 S 1.81934 * 109.76430 * 61.35538 * 9 7 2 12 12 C 1.81733 * 102.07690 * 168.30594 * 11 9 7 13 13 C 1.52943 * 109.19472 * 303.56331 * 12 11 9 14 14 C 1.52645 * 110.34249 * 66.18542 * 13 12 11 15 15 C 1.50735 * 110.25391 * 295.38444 * 14 13 12 16 16 O 1.20762 * 120.43502 * 241.96633 * 15 14 13 17 17 H 0.96999 * 119.99992 * 359.97438 * 1 2 3 18 18 H 1.09002 * 109.52710 * 183.62975 * 12 11 9 19 19 H 1.08998 * 109.52452 * 63.49365 * 12 11 9 20 20 H 1.08995 * 109.32319 * 186.45518 * 13 12 11 21 21 H 1.08995 * 109.32505 * 306.09605 * 13 12 11 22 22 H 1.09008 * 109.33584 * 55.61944 * 14 13 12 23 23 H 1.09001 * 109.34161 * 175.29724 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6126 -2.5566 0.8821 11 16 0.2331 -2.6219 -1.5024 12 6 -0.2806 -4.3648 -1.4725 13 6 0.9624 -5.2546 -1.4238 14 6 1.7010 -5.0625 -0.1018 15 6 2.2288 -3.6543 0.0011 16 8 3.4164 -3.4506 0.0827 17 1 -0.4850 0.8400 0.0004 18 1 -0.8553 -4.5907 -2.3707 19 1 -0.8949 -4.5485 -0.5911 20 1 0.6630 -6.2981 -1.5214 21 1 1.6269 -4.9916 -2.2467 22 1 1.0166 -5.2528 0.7250 23 1 2.5346 -5.7628 -0.0489 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259498843.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:59 Heat of formation + Delta-G solvation = -71.344481 kcal Electronic energy + Delta-G solvation = -9603.243058 eV Core-core repulsion = 7734.394094 eV Total energy + Delta-G solvation = -1868.848964 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.046 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.36500 -35.83179 -35.26597 -31.13596 -28.81497 -26.03807 -23.04218 -20.37162 -18.85470 -17.38413 -17.16200 -16.07941 -15.98209 -15.46719 -15.05277 -14.40595 -14.19908 -13.47211 -13.14074 -12.92319 -12.63851 -12.38624 -12.13609 -11.91307 -11.52173 -10.87462 -10.64315 -10.01100 -8.41140 -8.01582 -6.41873 0.85042 1.33067 1.38118 1.50006 1.52544 2.28920 2.39285 3.14009 3.30379 3.86460 3.96991 4.28064 4.55067 4.66175 4.73978 4.88481 4.92699 5.07235 5.20874 5.56348 5.83187 6.56466 6.69912 7.19430 8.72657 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.056874 B = 0.015845 C = 0.013155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.202236 B = 1766.692417 C = 2128.028952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.027 3.973 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.521 4.521 8 H 0.063 0.937 9 C 0.055 3.945 10 H 0.053 0.947 11 S -0.337 6.337 12 C -0.096 4.096 13 C -0.098 4.098 14 C -0.166 4.166 15 C 0.361 3.639 16 O -0.491 6.491 17 H 0.270 0.730 18 H 0.114 0.886 19 H 0.085 0.915 20 H 0.119 0.881 21 H 0.059 0.941 22 H 0.113 0.887 23 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.352 -8.624 -1.020 8.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.180 4.180 3 Si 0.789 3.211 4 H -0.200 1.200 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.564 4.564 8 H 0.081 0.919 9 C -0.070 4.070 10 H 0.070 0.930 11 S -0.105 6.105 12 C -0.244 4.244 13 C -0.137 4.137 14 C -0.204 4.204 15 C 0.236 3.764 16 O -0.367 6.367 17 H 0.080 0.920 18 H 0.132 0.868 19 H 0.104 0.896 20 H 0.137 0.863 21 H 0.078 0.922 22 H 0.131 0.869 23 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.239 -7.663 -1.768 7.961 hybrid contribution 0.460 0.295 0.891 1.045 sum -0.778 -7.368 -0.877 7.461 Atomic orbital electron populations 1.70124 1.06977 1.28214 1.44764 1.25855 0.95891 1.02843 0.93451 0.85444 0.78777 0.78365 0.78550 1.20003 1.19410 1.19398 1.21052 0.93458 0.90052 1.51830 0.91901 1.21274 0.95245 0.96470 0.93981 0.92958 1.87853 1.68566 1.14334 1.39781 1.23517 1.00542 0.94073 1.06258 1.21587 0.94971 1.01799 0.95313 1.22211 1.03350 0.93225 1.01572 1.25539 0.89254 0.93585 0.68028 1.90233 1.20232 1.88485 1.37746 0.92040 0.86809 0.89616 0.86324 0.92174 0.86867 0.87825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.37 12.29 21.45 0.26 -49.11 14 2 C 0.03 1.50 5.29 84.66 0.45 1.95 14 3 Si 0.96 44.31 29.54 68.60 2.03 46.34 14 4 H -0.27 -12.46 7.11 99.48 0.71 -11.75 14 5 H -0.27 -11.67 7.11 99.48 0.71 -10.97 14 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 14 7 C -0.52 -30.12 8.39 25.60 0.21 -29.91 14 8 H 0.06 3.80 6.82 -2.91 -0.02 3.78 14 9 C 0.06 2.84 2.74 29.31 0.08 2.92 14 10 H 0.05 2.81 8.14 -2.39 -0.02 2.79 14 11 S -0.34 -16.04 20.48 -56.49 -1.16 -17.20 14 12 C -0.10 -3.04 6.39 71.96 0.46 -2.58 14 13 C -0.10 -2.63 5.72 30.46 0.17 -2.46 14 14 C -0.17 -5.05 5.86 29.74 0.17 -4.87 14 15 C 0.36 16.11 6.41 29.32 0.19 16.30 14 16 O -0.49 -24.90 16.31 -1.46 -0.02 -24.92 14 17 H 0.27 14.49 8.31 -92.71 -0.77 13.72 14 18 H 0.11 3.09 8.14 -2.39 -0.02 3.07 14 19 H 0.09 2.53 8.14 -2.39 -0.02 2.51 14 20 H 0.12 2.14 8.14 -2.39 -0.02 2.12 14 21 H 0.06 1.80 8.14 -2.39 -0.02 1.78 14 22 H 0.11 2.93 8.14 -2.38 -0.02 2.91 14 23 H 0.10 2.74 8.12 -2.39 -0.02 2.72 14 Total: -1.00 -66.46 212.85 4.04 -62.42 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: 1.19 Total: 1.11 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 1.74 Total: -18.65 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.26 Total: -49.11 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.02 Total: -24.92 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: -16.04 SS G_CDS: -1.16 Total: -17.20 kcal Total: -66.46 4.04 -62.42 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259498843.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.923 kcal (2) G-P(sol) polarization free energy of solvation -66.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds