Wall clock time and date at job start Mon Mar 30 2020 01:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99878 * 2 1 4 4 H 1.48498 * 109.47447 * 270.00218 * 3 2 1 5 5 H 1.48502 * 109.47231 * 29.99998 * 3 2 1 6 6 H 1.48501 * 109.47140 * 149.99914 * 3 2 1 7 7 C 1.37875 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99705 * 175.26116 * 7 2 1 9 9 C 1.50694 * 120.00060 * 355.26002 * 7 2 1 10 10 C 1.52997 * 112.99916 * 65.57352 * 9 7 2 11 11 C 1.50697 * 109.47609 * 54.01855 * 10 9 7 12 12 O 1.20826 * 120.00019 * 356.48516 * 11 10 9 13 13 O 1.34227 * 120.00148 * 176.48528 * 11 10 9 14 14 C 1.54039 * 113.92584 * 197.49679 * 9 7 2 15 15 O 1.44185 * 85.51345 * 91.66491 * 14 9 7 16 16 C 1.44170 * 93.34103 * 24.19168 * 15 14 9 17 17 H 0.96997 * 119.99614 * 5.00028 * 1 2 3 18 18 H 1.09009 * 109.46861 * 294.01584 * 10 9 7 19 19 H 1.09008 * 109.47530 * 174.02347 * 10 9 7 20 20 H 0.96706 * 116.99719 * 180.02562 * 13 11 10 21 21 H 1.08998 * 113.86730 * 205.80928 * 14 9 7 22 22 H 1.09003 * 113.86702 * 337.52013 * 14 9 7 23 23 H 1.09002 * 113.86847 * 221.65715 * 16 15 14 24 24 H 1.09004 * 113.98141 * 89.96804 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0818 -1.1956 -0.0778 9 6 1.2549 -2.4969 0.1067 10 6 0.3623 -2.7744 -1.1045 11 6 1.1844 -2.6896 -2.3645 12 8 2.3485 -2.3712 -2.3060 13 8 0.6236 -2.9676 -3.5519 14 6 2.1354 -3.6923 0.5173 15 8 1.7622 -3.3575 1.8692 16 6 0.5473 -2.6979 1.4601 17 1 -0.4849 0.8369 -0.0732 18 1 -0.4384 -2.0357 -1.1426 19 1 -0.0680 -3.7723 -1.0178 20 1 1.1910 -2.8999 -4.3321 21 1 1.7547 -4.6566 0.1807 22 1 3.1954 -3.5528 0.3050 23 1 0.3476 -1.7696 1.9954 24 1 -0.3196 -3.3568 1.4108 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259499748.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:14 Heat of formation + Delta-G solvation = -106.439192 kcal Electronic energy + Delta-G solvation = -11909.166093 eV Core-core repulsion = 9596.042437 eV Total energy + Delta-G solvation = -2313.123656 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.68562 -38.59943 -35.17141 -32.98942 -30.60397 -26.46137 -25.30892 -24.51595 -20.92894 -18.79238 -17.07875 -16.32205 -15.41887 -14.94131 -14.65024 -14.40659 -14.16887 -13.97626 -12.40418 -12.16958 -11.60021 -11.49146 -10.93058 -10.73823 -10.58415 -10.18409 -9.70676 -9.65030 -9.36135 -8.97806 -8.62766 -8.28660 -6.09857 -4.08344 3.31082 3.32172 3.37051 3.43218 4.03292 4.41504 4.93075 5.24488 5.86946 6.07453 6.21896 6.31074 6.39975 6.53802 6.71875 7.10443 7.19865 7.32574 7.33428 7.50525 7.90406 8.28771 8.86882 8.95233 9.52140 10.98078 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.030930 B = 0.021554 C = 0.015600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.056692 B = 1298.721648 C = 1794.412374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.463 4.463 8 H 0.066 0.934 9 C 0.044 3.956 10 C -0.103 4.103 11 C 0.478 3.522 12 O -0.493 6.493 13 O -0.538 6.538 14 C 0.027 3.973 15 O -0.390 6.390 16 C 0.044 3.956 17 H 0.262 0.738 18 H 0.123 0.877 19 H 0.066 0.934 20 H 0.391 0.609 21 H 0.051 0.949 22 H 0.078 0.922 23 H 0.091 0.909 24 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.934 -4.357 -3.369 5.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.209 1.209 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.501 4.501 8 H 0.085 0.915 9 C 0.043 3.957 10 C -0.141 4.141 11 C 0.320 3.680 12 O -0.378 6.378 13 O -0.351 6.351 14 C -0.050 4.050 15 O -0.309 6.309 16 C -0.033 4.033 17 H 0.072 0.928 18 H 0.141 0.859 19 H 0.084 0.916 20 H 0.248 0.752 21 H 0.069 0.931 22 H 0.096 0.904 23 H 0.109 0.891 24 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.871 -4.198 -2.648 5.039 hybrid contribution 0.609 1.022 -0.844 1.458 sum -0.262 -3.177 -3.491 4.727 Atomic orbital electron populations 1.69832 1.05751 1.27155 1.51125 1.24933 0.95000 0.99213 0.95099 0.86464 0.79962 0.82935 0.78016 1.20872 1.21237 1.19720 1.20627 0.93474 0.88056 1.47902 0.91549 1.20867 0.91178 0.94408 0.89234 1.21628 1.00711 1.02051 0.89701 1.23851 0.87388 0.72475 0.84280 1.90651 1.18411 1.42006 1.86695 1.84627 1.48882 1.83465 1.18081 1.24122 1.00949 0.97007 0.82946 1.89481 1.38264 1.77025 1.26093 1.23978 0.86509 0.95482 0.97291 0.92778 0.85896 0.91553 0.75216 0.93109 0.90386 0.89076 0.93326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.20 11.39 55.43 0.63 -23.57 14 2 C 0.06 1.57 5.21 -17.82 -0.09 1.47 14 3 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 14 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 14 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 14 6 H -0.27 -6.60 7.11 56.52 0.40 -6.19 14 7 C -0.46 -12.61 6.17 -34.44 -0.21 -12.82 14 8 H 0.07 1.90 7.82 -52.49 -0.41 1.49 14 9 C 0.04 1.05 0.21 -154.58 -0.03 1.02 14 10 C -0.10 -2.24 5.08 -27.89 -0.14 -2.38 14 11 C 0.48 10.29 8.07 36.00 0.29 10.58 14 12 O -0.49 -11.97 15.16 -18.75 -0.28 -12.25 14 13 O -0.54 -9.39 13.42 -39.25 -0.53 -9.92 14 14 C 0.03 0.59 8.16 37.61 0.31 0.90 14 15 O -0.39 -9.39 12.40 -35.23 -0.44 -9.82 14 16 C 0.04 1.03 8.01 37.61 0.30 1.33 14 17 H 0.26 6.82 8.32 -40.82 -0.34 6.48 14 18 H 0.12 2.89 6.80 -51.92 -0.35 2.53 14 19 H 0.07 1.24 8.06 -51.92 -0.42 0.82 14 20 H 0.39 4.96 9.10 45.56 0.41 5.37 14 21 H 0.05 0.99 8.04 -51.93 -0.42 0.57 14 22 H 0.08 1.76 8.09 -51.93 -0.42 1.34 14 23 H 0.09 2.28 7.75 -51.93 -0.40 1.87 14 24 H 0.05 1.00 8.10 -51.93 -0.42 0.58 14 LS Contribution 216.23 15.07 3.26 3.26 Total: -1.00 -30.01 216.23 -3.52 -33.53 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -1.56 Total: 2.02 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 0.42 Total: 0.11 kcal Atomic # 7 Polarization: -24.20 SS G_CDS: 0.63 Total: -23.57 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -1.25 Total: -31.99 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -30.01 -3.52 -33.53 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259499748.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.909 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds