Wall clock time and date at job start Mon Mar 30 2020 01:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46894 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.29766 * 305.70740 * 10 9 7 12 12 S 1.83450 * 110.33510 * 67.86027 * 10 9 7 13 13 C 1.84081 * 95.50003 * 138.19532 * 12 10 9 14 14 C 1.55231 * 100.50154 * 325.43159 * 13 12 10 15 15 C 1.50760 * 109.18583 * 41.13161 * 14 13 12 16 16 O 1.20757 * 123.46042 * 149.60073 * 15 14 13 17 17 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 18 18 H 1.08995 * 109.47439 * 299.99276 * 9 7 2 19 19 H 1.09007 * 109.47443 * 60.00458 * 9 7 2 20 20 H 1.09009 * 111.20868 * 83.24041 * 13 12 10 21 21 H 1.09000 * 111.21042 * 207.57499 * 13 12 10 22 22 H 1.09007 * 109.53727 * 161.00393 * 14 13 12 23 23 H 1.08993 * 109.54051 * 281.16651 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 1 3.5855 -3.1917 0.8295 12 16 3.6224 -3.4540 -1.5940 13 6 5.2463 -4.3032 -1.7683 14 6 6.1892 -3.2425 -1.1395 15 6 5.5324 -2.6601 0.0861 16 8 6.1484 -2.2529 1.0416 17 1 -0.4849 0.8401 -0.0004 18 1 3.8746 -0.6800 -0.8911 19 1 3.8753 -0.6803 0.8889 20 1 5.2671 -5.2345 -1.2021 21 1 5.4901 -4.4767 -2.8165 22 1 7.1312 -3.7134 -0.8581 23 1 6.3798 -2.4497 -1.8628 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259554684.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:17 Heat of formation + Delta-G solvation = -45.847853 kcal Electronic energy + Delta-G solvation = -9382.678748 eV Core-core repulsion = 7514.935401 eV Total energy + Delta-G solvation = -1867.743347 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.046 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -39.28215 -34.17630 -33.16842 -31.15045 -26.39034 -24.32638 -21.52284 -19.10827 -16.99586 -16.58297 -15.66323 -14.93221 -14.40344 -13.93407 -13.57041 -13.17020 -12.63431 -12.47744 -11.82293 -11.58074 -11.08116 -10.59911 -10.34941 -10.05317 -9.61649 -9.44780 -9.05474 -8.59295 -7.22029 -6.09732 -4.09536 2.01383 2.15306 2.74702 3.28788 3.36002 3.38785 4.16258 4.40168 4.63703 5.02301 5.08027 5.24382 5.58421 5.63619 5.73838 5.83485 6.18721 6.90597 7.05935 7.48441 7.63738 8.42428 8.93290 9.49998 11.03010 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.051618 B = 0.013755 C = 0.011879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.318523 B = 2035.084899 C = 2356.528739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.265 1.265 6 H -0.285 1.285 7 C -0.520 4.520 8 H 0.079 0.921 9 C 0.010 3.990 10 C -0.081 4.081 11 H 0.120 0.880 12 S -0.224 6.224 13 C -0.092 4.092 14 C -0.184 4.184 15 C 0.368 3.632 16 O -0.441 6.441 17 H 0.265 0.735 18 H 0.032 0.968 19 H 0.031 0.969 20 H 0.089 0.911 21 H 0.110 0.890 22 H 0.098 0.902 23 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.862 -6.061 -3.411 12.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.190 1.190 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.097 0.903 9 C -0.028 4.028 10 C -0.211 4.211 11 H 0.138 0.862 12 S 0.002 5.998 13 C -0.241 4.241 14 C -0.222 4.222 15 C 0.241 3.759 16 O -0.313 6.313 17 H 0.075 0.925 18 H 0.050 0.950 19 H 0.049 0.951 20 H 0.108 0.892 21 H 0.128 0.872 22 H 0.116 0.884 23 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 10.029 -5.724 -3.612 12.099 hybrid contribution 1.238 0.856 0.668 1.647 sum 11.266 -4.868 -2.944 12.621 Atomic orbital electron populations 1.69894 1.06216 1.27033 1.50251 1.24929 0.94722 0.98959 0.94265 0.86847 0.80431 0.83809 0.78696 1.20104 1.18991 1.21068 1.20936 0.88157 0.94993 1.51730 0.90296 1.19563 0.98492 0.86932 0.97834 1.24365 0.94641 1.04535 0.97548 0.86215 1.88483 1.20829 1.59748 1.30768 1.24239 0.95770 0.99403 1.04653 1.22753 1.00400 1.00456 0.98638 1.25166 0.91381 0.72986 0.86382 1.90390 1.69664 1.37090 1.34185 0.92534 0.95011 0.95079 0.89207 0.87169 0.88410 0.86754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.96 55.43 0.77 -26.68 14 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 14 3 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 14 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 14 5 H -0.27 -6.32 6.54 56.52 0.37 -5.95 14 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 14 7 C -0.52 -14.64 9.21 -34.44 -0.32 -14.95 14 8 H 0.08 2.40 7.99 -52.49 -0.42 1.98 14 9 C 0.01 0.24 3.57 -27.88 -0.10 0.14 14 10 C -0.08 -1.62 3.19 -27.56 -0.09 -1.71 14 11 H 0.12 2.39 8.14 -51.93 -0.42 1.97 14 12 S -0.22 -4.10 22.27 -107.50 -2.39 -6.50 14 13 C -0.09 -1.12 7.56 38.34 0.29 -0.83 14 14 C -0.18 -2.34 6.24 -26.67 -0.17 -2.51 14 15 C 0.37 6.38 6.74 -28.69 -0.19 6.19 14 16 O -0.44 -8.69 17.98 6.00 0.11 -8.59 14 17 H 0.26 7.59 8.31 -40.82 -0.34 7.25 14 18 H 0.03 0.76 7.20 -51.93 -0.37 0.39 14 19 H 0.03 0.76 7.57 -51.93 -0.39 0.36 14 20 H 0.09 0.96 8.14 -51.92 -0.42 0.54 14 21 H 0.11 1.09 8.14 -51.93 -0.42 0.66 14 22 H 0.10 1.02 8.14 -51.92 -0.42 0.60 14 23 H 0.11 1.36 8.14 -51.93 -0.42 0.94 14 LS Contribution 216.20 15.07 3.26 3.26 Total: -1.00 -31.25 216.20 -6.06 -37.31 By element: Atomic # 1 Polarization: -1.68 SS G_CDS: -2.47 Total: -4.15 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -0.67 Total: -11.64 kcal Atomic # 7 Polarization: -27.45 SS G_CDS: 0.77 Total: -26.68 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.11 Total: -8.59 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Atomic # 16 Polarization: -4.10 SS G_CDS: -2.39 Total: -6.50 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -31.25 -6.06 -37.31 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259554684.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.538 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds