Wall clock time and date at job start Mon Mar 30 2020 01:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46894 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.29766 * 305.70740 * 10 9 7 12 12 S 1.83450 * 110.33510 * 67.86027 * 10 9 7 13 13 C 1.84081 * 95.50003 * 138.19532 * 12 10 9 14 14 C 1.55231 * 100.50154 * 325.43159 * 13 12 10 15 15 C 1.50760 * 109.18583 * 41.13161 * 14 13 12 16 16 O 1.20757 * 123.46042 * 149.60073 * 15 14 13 17 17 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 18 18 H 1.08995 * 109.47439 * 299.99276 * 9 7 2 19 19 H 1.09007 * 109.47443 * 60.00458 * 9 7 2 20 20 H 1.09009 * 111.20868 * 83.24041 * 13 12 10 21 21 H 1.09000 * 111.21042 * 207.57499 * 13 12 10 22 22 H 1.09007 * 109.53727 * 161.00393 * 14 13 12 23 23 H 1.08993 * 109.54051 * 281.16651 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 1 3.5855 -3.1917 0.8295 12 16 3.6224 -3.4540 -1.5940 13 6 5.2463 -4.3032 -1.7683 14 6 6.1892 -3.2425 -1.1395 15 6 5.5324 -2.6601 0.0861 16 8 6.1484 -2.2529 1.0416 17 1 -0.4849 0.8401 -0.0004 18 1 3.8746 -0.6800 -0.8911 19 1 3.8753 -0.6803 0.8889 20 1 5.2671 -5.2345 -1.2021 21 1 5.4901 -4.4767 -2.8165 22 1 7.1312 -3.7134 -0.8581 23 1 6.3798 -2.4497 -1.8628 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259554684.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:17 Heat of formation + Delta-G solvation = -66.747548 kcal Electronic energy + Delta-G solvation = -9383.585027 eV Core-core repulsion = 7514.935401 eV Total energy + Delta-G solvation = -1868.649626 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.046 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.69129 -35.90192 -34.72790 -32.99834 -28.20088 -25.50941 -23.42199 -20.55598 -19.00897 -17.99136 -17.07628 -16.42780 -16.20366 -15.48386 -15.12516 -14.65512 -14.40975 -13.75099 -13.45743 -13.05049 -12.71824 -12.34012 -12.01265 -11.89389 -11.62277 -11.03434 -10.80120 -10.52583 -8.67696 -8.32464 -6.37542 0.64936 0.80936 1.33188 1.33955 1.45123 1.46934 2.31757 2.86877 3.02570 3.59276 3.84562 4.04138 4.20273 4.41214 4.71825 4.77087 4.87653 4.93133 5.15074 5.49268 6.14405 6.20822 6.67452 7.25525 8.83797 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.051618 B = 0.013755 C = 0.011879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.318523 B = 2035.084899 C = 2356.528739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.248 1.248 6 H -0.279 1.279 7 C -0.523 4.523 8 H 0.039 0.961 9 C 0.015 3.985 10 C -0.087 4.087 11 H 0.105 0.895 12 S -0.291 6.291 13 C -0.061 4.061 14 C -0.172 4.172 15 C 0.374 3.626 16 O -0.468 6.468 17 H 0.268 0.732 18 H 0.035 0.965 19 H 0.026 0.974 20 H 0.111 0.889 21 H 0.146 0.854 22 H 0.136 0.864 23 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.680 -6.279 -4.413 15.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.172 1.172 6 H -0.204 1.204 7 C -0.561 4.561 8 H 0.058 0.942 9 C -0.023 4.023 10 C -0.216 4.216 11 H 0.123 0.877 12 S -0.065 6.065 13 C -0.209 4.209 14 C -0.210 4.210 15 C 0.248 3.752 16 O -0.342 6.342 17 H 0.077 0.923 18 H 0.053 0.947 19 H 0.044 0.956 20 H 0.130 0.870 21 H 0.164 0.836 22 H 0.154 0.846 23 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.856 -5.962 -4.621 14.905 hybrid contribution 0.337 0.779 0.966 1.287 sum 13.193 -5.182 -3.654 14.638 Atomic orbital electron populations 1.70042 1.08123 1.28221 1.52062 1.25873 0.95572 1.03106 0.93986 0.85771 0.79619 0.78810 0.79202 1.19344 1.17171 1.20404 1.21165 0.90568 0.93538 1.50839 0.94236 1.19372 0.95524 0.89985 0.97447 1.24188 0.97423 1.01941 0.98088 0.87712 1.88618 1.26968 1.61229 1.29713 1.24475 0.89936 0.99190 1.07266 1.22735 1.01136 1.00979 0.96135 1.25444 0.89739 0.72397 0.87583 1.90387 1.69566 1.38546 1.35671 0.92317 0.94701 0.95621 0.87005 0.83628 0.84610 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.67 13.96 21.45 0.30 -59.37 14 2 C 0.01 0.72 5.47 84.65 0.46 1.19 14 3 Si 0.94 44.76 27.47 68.60 1.88 46.64 14 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 14 5 H -0.25 -10.98 6.54 99.48 0.65 -10.33 14 6 H -0.28 -12.86 7.11 99.48 0.71 -12.15 14 7 C -0.52 -30.40 9.21 25.60 0.24 -30.16 14 8 H 0.04 2.54 7.99 -2.91 -0.02 2.52 14 9 C 0.02 0.73 3.57 29.85 0.11 0.83 14 10 C -0.09 -3.44 3.19 30.06 0.10 -3.34 14 11 H 0.10 4.34 8.14 -2.38 -0.02 4.32 14 12 S -0.29 -10.36 22.27 -56.49 -1.26 -11.62 14 13 C -0.06 -1.21 7.56 72.75 0.55 -0.66 14 14 C -0.17 -3.54 6.24 30.63 0.19 -3.35 14 15 C 0.37 12.09 6.74 29.33 0.20 12.29 14 16 O -0.47 -17.55 17.98 -1.44 -0.03 -17.58 14 17 H 0.27 15.75 8.31 -92.71 -0.77 14.98 14 18 H 0.03 1.64 7.20 -2.39 -0.02 1.62 14 19 H 0.03 1.25 7.57 -2.38 -0.02 1.23 14 20 H 0.11 1.82 8.14 -2.38 -0.02 1.80 14 21 H 0.15 1.98 8.14 -2.39 -0.02 1.96 14 22 H 0.14 1.96 8.14 -2.38 -0.02 1.94 14 23 H 0.13 2.42 8.14 -2.39 -0.02 2.40 14 Total: -1.00 -70.37 216.20 3.88 -66.49 By element: Atomic # 1 Polarization: -2.50 SS G_CDS: 1.14 Total: -1.37 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: 1.84 Total: -23.20 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.30 Total: -59.37 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.03 Total: -17.58 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.88 Total: 46.64 kcal Atomic # 16 Polarization: -10.36 SS G_CDS: -1.26 Total: -11.62 kcal Total: -70.37 3.88 -66.49 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259554684.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.261 kcal (2) G-P(sol) polarization free energy of solvation -70.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds