Wall clock time and date at job start Mon Mar 30 2020 01:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99819 * 2 1 4 4 H 1.48497 * 109.46924 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47225 * 299.99432 * 3 2 1 6 6 H 1.48494 * 109.47142 * 59.99832 * 3 2 1 7 7 C 1.37871 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00062 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47558 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.29746 * 55.69933 * 10 9 7 12 12 S 1.83455 * 110.33641 * 293.54744 * 10 9 7 13 13 C 1.84085 * 95.49919 * 221.69873 * 12 10 9 14 14 C 1.55232 * 100.50176 * 34.56847 * 13 12 10 15 15 C 1.50530 * 109.14125 * 318.94709 * 14 13 12 16 16 O 1.20763 * 123.31919 * 210.29999 * 15 14 13 17 17 H 0.97008 * 120.00005 * 0.02562 * 1 2 3 18 18 H 1.09003 * 109.47408 * 59.99212 * 9 7 2 19 19 H 1.09003 * 109.46933 * 299.99551 * 9 7 2 20 20 H 1.08996 * 111.20725 * 276.75314 * 13 12 10 21 21 H 1.09004 * 111.20625 * 152.38025 * 13 12 10 22 22 H 1.09002 * 109.53914 * 78.87050 * 14 13 12 23 23 H 1.09002 * 109.53733 * 199.02796 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9288 -3.5751 0.8451 12 16 3.1818 -3.7001 -1.5764 13 6 3.1118 -5.5284 -1.7791 14 6 1.7109 -5.8260 -1.1801 15 6 1.5117 -4.9839 0.0516 16 8 0.8326 -5.3292 0.9885 17 1 -0.4850 0.8401 -0.0004 18 1 0.6246 -2.5571 -0.8896 19 1 0.6241 -2.5567 0.8904 20 1 3.8982 -6.0191 -1.2058 21 1 3.1589 -5.8106 -2.8310 22 1 0.9419 -5.5857 -1.9143 23 1 1.6446 -6.8812 -0.9149 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259554687.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:18 Heat of formation + Delta-G solvation = -69.989132 kcal Electronic energy + Delta-G solvation = -9347.648302 eV Core-core repulsion = 7478.858110 eV Total energy + Delta-G solvation = -1868.790192 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.046 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.67333 -35.90670 -34.73914 -32.65801 -27.89062 -25.56011 -23.83354 -20.44321 -18.68140 -17.95429 -16.95801 -16.64126 -16.20313 -15.42808 -15.01126 -14.44084 -14.31924 -13.65564 -13.32865 -12.94774 -12.75783 -12.50428 -12.05711 -11.89824 -11.53809 -11.03391 -10.63035 -10.49151 -8.63262 -8.25205 -6.36168 0.67685 0.83806 1.38712 1.39246 1.47690 1.53044 2.37960 2.92572 3.09780 3.60566 3.87639 4.08935 4.24779 4.48280 4.71227 4.78776 4.88655 5.23670 5.35172 5.68645 6.04996 6.21586 6.75121 7.32587 8.87078 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.058317 B = 0.012329 C = 0.010792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.020449 B = 2270.433357 C = 2593.928716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.966 3.034 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.530 4.530 8 H 0.062 0.938 9 C 0.055 3.945 10 C -0.091 4.091 11 H 0.108 0.892 12 S -0.285 6.285 13 C -0.060 4.060 14 C -0.173 4.173 15 C 0.370 3.630 16 O -0.474 6.474 17 H 0.265 0.735 18 H 0.009 0.991 19 H 0.000 1.000 20 H 0.114 0.886 21 H 0.146 0.854 22 H 0.126 0.874 23 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.254 -10.405 -4.464 12.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.791 3.209 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.568 4.568 8 H 0.081 0.919 9 C 0.017 3.983 10 C -0.220 4.220 11 H 0.126 0.874 12 S -0.059 6.059 13 C -0.207 4.207 14 C -0.211 4.211 15 C 0.245 3.755 16 O -0.348 6.348 17 H 0.074 0.926 18 H 0.027 0.973 19 H 0.018 0.982 20 H 0.133 0.867 21 H 0.164 0.836 22 H 0.144 0.856 23 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.266 -9.608 -4.659 12.381 hybrid contribution -0.458 0.386 0.937 1.112 sum 5.808 -9.223 -3.721 11.517 Atomic orbital electron populations 1.70093 1.07777 1.27939 1.51322 1.25914 0.95724 1.03269 0.94483 0.85369 0.79048 0.78658 0.77848 1.18673 1.20178 1.20322 1.21422 0.93315 0.91229 1.50831 0.91939 1.18796 0.92766 0.90928 0.95853 1.24317 1.00840 0.98660 0.98225 0.87424 1.88328 1.73540 1.12666 1.31357 1.24462 0.97640 0.91253 1.07356 1.22693 0.99758 1.02531 0.96114 1.25463 0.75897 0.86691 0.87445 1.90377 1.33213 1.73819 1.37434 0.92575 0.97295 0.98232 0.86726 0.83641 0.85639 0.84691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.06 13.29 21.44 0.28 -56.78 14 2 C 0.00 0.25 5.46 84.65 0.46 0.71 14 3 Si 0.97 44.93 29.54 68.60 2.03 46.96 14 4 H -0.26 -11.75 7.11 99.48 0.71 -11.04 14 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 14 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 14 7 C -0.53 -30.30 8.62 25.60 0.22 -30.08 14 8 H 0.06 3.49 7.70 -2.91 -0.02 3.47 14 9 C 0.05 2.94 4.53 29.85 0.14 3.07 14 10 C -0.09 -3.81 3.21 30.02 0.10 -3.71 14 11 H 0.11 4.52 8.14 -2.39 -0.02 4.50 14 12 S -0.28 -10.19 22.19 -56.49 -1.25 -11.44 14 13 C -0.06 -1.24 7.56 72.75 0.55 -0.69 14 14 C -0.17 -4.05 6.23 30.56 0.19 -3.86 14 15 C 0.37 13.29 6.72 29.22 0.20 13.49 14 16 O -0.47 -19.88 17.98 -1.46 -0.03 -19.91 14 17 H 0.27 15.21 8.31 -92.70 -0.77 14.44 14 18 H 0.01 0.50 8.14 -2.39 -0.02 0.48 14 19 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 14 20 H 0.11 1.91 8.14 -2.39 -0.02 1.89 14 21 H 0.15 2.12 8.14 -2.38 -0.02 2.10 14 22 H 0.13 2.81 8.14 -2.39 -0.02 2.79 14 23 H 0.14 2.30 8.14 -2.39 -0.02 2.28 14 Total: -1.00 -69.07 219.64 4.07 -65.00 By element: Atomic # 1 Polarization: -3.96 SS G_CDS: 1.19 Total: -2.77 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: 1.85 Total: -21.07 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.28 Total: -56.78 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.03 Total: -19.91 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: -10.19 SS G_CDS: -1.25 Total: -11.44 kcal Total: -69.07 4.07 -65.00 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259554687.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.991 kcal (2) G-P(sol) polarization free energy of solvation -69.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds