Wall clock time and date at job start Mon Mar 30 2020 02:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 H 1.08998 * 109.54267 * 305.18213 * 10 9 7 12 12 C 1.53183 * 109.53861 * 65.45029 * 10 9 7 13 13 C 1.53087 * 109.16285 * 176.84891 * 12 10 9 14 14 O 1.42911 * 109.41402 * 302.39040 * 13 12 10 15 15 C 1.42901 * 114.09541 * 61.15676 * 14 13 12 16 16 C 1.53091 * 109.41628 * 298.84267 * 15 14 13 17 17 H 1.09000 * 109.51853 * 177.51666 * 16 15 14 18 18 O 1.42894 * 109.52233 * 297.70576 * 16 15 14 19 19 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 21 21 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 22 22 H 1.08998 * 109.51985 * 296.74982 * 12 10 9 23 23 H 1.08995 * 109.52442 * 56.94234 * 12 10 9 24 24 H 1.08997 * 109.48437 * 182.40482 * 13 12 10 25 25 H 1.09004 * 109.49340 * 62.37727 * 13 12 10 26 26 H 1.09000 * 109.47453 * 178.85979 * 15 14 13 27 27 H 1.08996 * 109.48090 * 58.83164 * 15 14 13 28 28 H 0.96704 * 114.00439 * 299.68652 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0108 11 1 3.5887 -3.1791 0.8296 12 6 3.6214 -3.3169 -1.3235 13 6 4.2027 -4.7328 -1.3533 14 8 5.6228 -4.6664 -1.2067 15 6 6.0556 -4.0824 0.0236 16 6 5.5487 -2.6404 0.1087 17 1 5.8403 -2.2077 1.0656 18 8 6.1129 -1.8723 -0.9560 19 1 -0.4850 0.8400 -0.0004 20 1 3.8713 -0.6783 -0.8962 21 1 3.8786 -0.6819 0.8837 22 1 2.5347 -3.3679 -1.3907 23 1 4.0129 -2.7447 -2.1645 24 1 3.9571 -5.2067 -2.3036 25 1 3.7799 -5.3169 -0.5358 26 1 7.1448 -4.0879 0.0651 27 1 5.6571 -4.6578 0.8591 28 1 7.0790 -1.8317 -0.9427 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259562917.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:37 Heat of formation + Delta-G solvation = -110.927674 kcal Electronic energy + Delta-G solvation = -11949.285275 eV Core-core repulsion = 9771.800079 eV Total energy + Delta-G solvation = -2177.485197 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.30747 -35.81250 -34.11524 -32.01556 -29.87412 -28.36780 -24.44347 -22.94284 -21.07520 -19.20912 -17.04941 -16.60678 -15.85685 -15.30873 -14.71219 -14.23295 -13.80945 -12.98482 -12.71034 -12.51604 -12.06698 -11.77482 -11.31285 -10.86238 -10.70298 -10.33587 -10.01731 -9.82629 -9.74157 -9.54257 -9.01534 -8.71771 -8.48872 -6.00762 -3.97744 3.35563 3.41966 3.47770 4.12573 4.50031 4.73635 5.10098 5.17230 5.33045 5.46187 5.56139 5.72011 5.73539 5.84567 5.95628 6.31242 6.44987 6.67762 6.89317 7.05337 7.31961 7.46592 7.55305 7.83605 8.07337 8.56953 9.03380 9.62744 11.12530 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.058659 B = 0.012236 C = 0.010781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.221411 B = 2287.825041 C = 2596.517929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.072 0.928 9 C -0.003 4.003 10 C -0.067 4.067 11 H 0.072 0.928 12 C -0.136 4.136 13 C 0.058 3.942 14 O -0.382 6.382 15 C 0.031 3.969 16 C 0.071 3.929 17 H 0.056 0.944 18 O -0.547 6.547 19 H 0.262 0.738 20 H 0.022 0.978 21 H 0.012 0.988 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.054 0.946 28 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.332 -6.343 0.210 12.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.090 0.910 9 C -0.040 4.040 10 C -0.086 4.086 11 H 0.091 0.909 12 C -0.174 4.174 13 C -0.018 4.018 14 O -0.301 6.301 15 C -0.046 4.046 16 C 0.012 3.988 17 H 0.074 0.926 18 O -0.350 6.350 19 H 0.072 0.928 20 H 0.041 0.959 21 H 0.030 0.970 22 H 0.101 0.899 23 H 0.090 0.910 24 H 0.105 0.895 25 H 0.062 0.938 26 H 0.104 0.896 27 H 0.072 0.928 28 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 10.656 -6.220 -0.083 12.338 hybrid contribution 0.723 0.952 0.443 1.275 sum 11.378 -5.267 0.360 12.543 Atomic orbital electron populations 1.69919 1.06266 1.26799 1.51547 1.25013 0.94702 0.99155 0.94656 0.86767 0.80263 0.83624 0.78553 1.20316 1.21578 1.19099 1.21169 0.89531 0.94327 1.50435 0.90994 1.19514 0.96684 0.91082 0.96705 1.21125 0.89662 1.00291 0.97492 0.90925 1.22079 1.01970 0.94481 0.98867 1.22717 0.80526 0.97582 1.01013 1.87856 1.22680 1.81310 1.38239 1.23277 0.99378 0.94425 0.87539 1.22650 0.96506 0.89815 0.89852 0.92612 1.86669 1.23734 1.73451 1.51169 0.92838 0.95928 0.96993 0.89903 0.90995 0.89468 0.93794 0.89559 0.92821 0.79112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.24 13.96 55.43 0.77 -27.47 15 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 15 3 Si 0.88 22.45 27.46 -169.99 -4.67 17.79 15 4 H -0.28 -7.02 7.11 56.52 0.40 -6.61 15 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 15 6 H -0.27 -6.59 6.55 56.52 0.37 -6.22 15 7 C -0.52 -14.81 9.01 -34.44 -0.31 -15.12 15 8 H 0.07 2.18 7.34 -52.49 -0.39 1.79 15 9 C 0.00 -0.06 3.27 -27.88 -0.09 -0.15 15 10 C -0.07 -1.36 2.06 -90.43 -0.19 -1.55 15 11 H 0.07 1.45 8.14 -51.93 -0.42 1.02 15 12 C -0.14 -2.65 5.03 -26.59 -0.13 -2.79 15 13 C 0.06 0.93 6.84 37.20 0.25 1.19 15 14 O -0.38 -6.31 10.70 -42.73 -0.46 -6.77 15 15 C 0.03 0.44 6.49 37.20 0.24 0.68 15 16 C 0.07 1.18 3.29 -26.60 -0.09 1.10 15 17 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 18 O -0.55 -9.41 12.04 -42.73 -0.51 -9.92 15 19 H 0.26 7.66 8.31 -40.82 -0.34 7.33 15 20 H 0.02 0.58 7.20 -51.93 -0.37 0.21 15 21 H 0.01 0.30 7.21 -51.93 -0.37 -0.08 15 22 H 0.08 1.72 7.09 -51.93 -0.37 1.35 15 23 H 0.07 1.50 7.83 -51.93 -0.41 1.10 15 24 H 0.09 1.25 8.14 -51.93 -0.42 0.83 15 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 15 26 H 0.09 0.99 8.14 -51.93 -0.42 0.56 15 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 15 28 H 0.36 4.34 9.09 45.56 0.41 4.76 15 LS Contribution 229.29 15.07 3.46 3.46 Total: -1.00 -32.59 229.29 -5.02 -37.61 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -3.20 Total: 0.11 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -0.41 Total: -14.80 kcal Atomic # 7 Polarization: -28.24 SS G_CDS: 0.77 Total: -27.47 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.97 Total: -16.69 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.67 Total: 17.79 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -32.59 -5.02 -37.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259562917.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.317 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds