Wall clock time and date at job start Mon Mar 30 2020 02:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 H 1.08998 * 109.54267 * 305.18213 * 10 9 7 12 12 C 1.53183 * 109.53861 * 65.45029 * 10 9 7 13 13 C 1.53087 * 109.16285 * 176.84891 * 12 10 9 14 14 O 1.42911 * 109.41402 * 302.39040 * 13 12 10 15 15 C 1.42901 * 114.09541 * 61.15676 * 14 13 12 16 16 C 1.53091 * 109.41628 * 298.84267 * 15 14 13 17 17 H 1.09000 * 109.51853 * 177.51666 * 16 15 14 18 18 O 1.42894 * 109.52233 * 297.70576 * 16 15 14 19 19 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 21 21 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 22 22 H 1.08998 * 109.51985 * 296.74982 * 12 10 9 23 23 H 1.08995 * 109.52442 * 56.94234 * 12 10 9 24 24 H 1.08997 * 109.48437 * 182.40482 * 13 12 10 25 25 H 1.09004 * 109.49340 * 62.37727 * 13 12 10 26 26 H 1.09000 * 109.47453 * 178.85979 * 15 14 13 27 27 H 1.08996 * 109.48090 * 58.83164 * 15 14 13 28 28 H 0.96704 * 114.00439 * 299.68652 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0108 11 1 3.5887 -3.1791 0.8296 12 6 3.6214 -3.3169 -1.3235 13 6 4.2027 -4.7328 -1.3533 14 8 5.6228 -4.6664 -1.2067 15 6 6.0556 -4.0824 0.0236 16 6 5.5487 -2.6404 0.1087 17 1 5.8403 -2.2077 1.0656 18 8 6.1129 -1.8723 -0.9560 19 1 -0.4850 0.8400 -0.0004 20 1 3.8713 -0.6783 -0.8962 21 1 3.8786 -0.6819 0.8837 22 1 2.5347 -3.3679 -1.3907 23 1 4.0129 -2.7447 -2.1645 24 1 3.9571 -5.2067 -2.3036 25 1 3.7799 -5.3169 -0.5358 26 1 7.1448 -4.0879 0.0651 27 1 5.6571 -4.6578 0.8591 28 1 7.0790 -1.8317 -0.9427 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259562917.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:37 Heat of formation + Delta-G solvation = -136.171254 kcal Electronic energy + Delta-G solvation = -11950.379919 eV Core-core repulsion = 9771.800079 eV Total energy + Delta-G solvation = -2178.579840 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.63118 -37.10768 -35.88888 -34.05624 -31.20160 -30.15974 -26.16169 -24.29933 -22.83372 -20.74742 -18.97938 -18.14283 -17.19479 -16.63845 -16.21774 -15.93193 -15.31163 -14.76011 -14.58121 -13.89770 -13.76198 -13.52118 -12.87807 -12.49610 -12.35024 -12.09612 -11.81815 -11.56468 -11.35174 -11.11508 -10.88819 -10.75378 -10.06959 -8.29448 -6.31396 1.33598 1.34050 1.46847 2.35147 2.96166 3.05904 3.52743 3.87136 3.94079 4.03761 4.16509 4.43390 4.56019 4.63622 4.70095 4.83667 4.94569 5.09716 5.19349 5.35701 5.37407 5.65103 5.70041 6.24910 6.29550 6.75005 7.05766 7.32687 8.86963 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.058659 B = 0.012236 C = 0.010781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.221411 B = 2287.825041 C = 2596.517929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.251 1.251 7 C -0.522 4.522 8 H 0.039 0.961 9 C 0.004 3.996 10 C -0.074 4.074 11 H 0.073 0.927 12 C -0.133 4.133 13 C 0.066 3.934 14 O -0.392 6.392 15 C 0.032 3.968 16 C 0.075 3.925 17 H 0.073 0.927 18 O -0.572 6.572 19 H 0.265 0.735 20 H 0.010 0.990 21 H 0.013 0.987 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.104 0.896 25 H 0.059 0.941 26 H 0.122 0.878 27 H 0.069 0.931 28 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.675 -6.503 0.639 15.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.192 4.192 3 Si 0.771 3.229 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.175 1.175 7 C -0.560 4.560 8 H 0.057 0.943 9 C -0.033 4.033 10 C -0.092 4.092 11 H 0.091 0.909 12 C -0.171 4.171 13 C -0.011 4.011 14 O -0.311 6.311 15 C -0.045 4.045 16 C 0.016 3.984 17 H 0.091 0.909 18 O -0.379 6.379 19 H 0.074 0.926 20 H 0.029 0.971 21 H 0.031 0.969 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.122 0.878 25 H 0.077 0.923 26 H 0.140 0.860 27 H 0.088 0.912 28 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 13.032 -6.393 0.351 14.520 hybrid contribution -0.042 0.961 0.304 1.009 sum 12.990 -5.433 0.655 14.095 Atomic orbital electron populations 1.70059 1.08050 1.27968 1.53123 1.25943 0.95569 1.03240 0.94485 0.85708 0.79425 0.78890 0.78889 1.19845 1.20708 1.17506 1.21493 0.91859 0.93124 1.49491 0.94282 1.19401 0.93766 0.94264 0.95888 1.21099 0.93052 0.97283 0.97796 0.90917 1.21976 1.00365 0.96865 0.97846 1.22652 0.80642 0.95106 1.02656 1.87852 1.22261 1.81344 1.39618 1.23453 1.01459 0.92391 0.87168 1.22553 0.93516 0.91908 0.90464 0.90925 1.86602 1.26105 1.73751 1.51450 0.92599 0.97127 0.96857 0.92619 0.92974 0.87834 0.92308 0.86023 0.91246 0.76363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.66 13.96 21.45 0.30 -60.36 15 2 C 0.00 0.24 5.47 84.65 0.46 0.71 15 3 Si 0.95 46.29 27.46 68.60 1.88 48.18 15 4 H -0.27 -13.08 7.11 99.48 0.71 -12.38 15 5 H -0.28 -13.30 7.11 99.48 0.71 -12.59 15 6 H -0.25 -11.58 6.55 99.48 0.65 -10.92 15 7 C -0.52 -30.61 9.01 25.60 0.23 -30.38 15 8 H 0.04 2.48 7.34 -2.91 -0.02 2.46 15 9 C 0.00 0.21 3.27 29.85 0.10 0.30 15 10 C -0.07 -2.93 2.06 -10.67 -0.02 -2.95 15 11 H 0.07 2.85 8.14 -2.39 -0.02 2.83 15 12 C -0.13 -5.17 5.03 30.68 0.15 -5.01 15 13 C 0.07 2.00 6.84 72.01 0.49 2.49 15 14 O -0.39 -11.71 10.70 -141.81 -1.52 -13.23 15 15 C 0.03 0.78 6.49 72.01 0.47 1.25 15 16 C 0.07 2.28 3.29 30.68 0.10 2.38 15 17 H 0.07 1.98 8.14 -2.39 -0.02 1.96 15 18 O -0.57 -18.19 12.04 -141.81 -1.71 -19.90 15 19 H 0.27 15.80 8.31 -92.71 -0.77 15.03 15 20 H 0.01 0.53 7.20 -2.39 -0.02 0.52 15 21 H 0.01 0.64 7.21 -2.38 -0.02 0.62 15 22 H 0.06 2.41 7.09 -2.39 -0.02 2.39 15 23 H 0.05 2.20 7.83 -2.39 -0.02 2.18 15 24 H 0.10 2.77 8.14 -2.39 -0.02 2.75 15 25 H 0.06 1.62 8.14 -2.39 -0.02 1.60 15 26 H 0.12 2.15 8.14 -2.39 -0.02 2.13 15 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 15 28 H 0.39 7.93 9.09 -74.05 -0.67 7.26 15 Total: -1.00 -70.58 229.29 1.36 -69.22 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 0.41 Total: 7.31 kcal Atomic # 6 Polarization: -33.21 SS G_CDS: 1.98 Total: -31.22 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.30 Total: -60.36 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -3.22 Total: -33.13 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.88 Total: 48.18 kcal Total: -70.58 1.36 -69.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259562917.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.950 kcal (2) G-P(sol) polarization free energy of solvation -70.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds