Wall clock time and date at job start Mon Mar 30 2020 02:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00181 * 2 1 4 4 H 1.48498 * 109.46975 * 270.00214 * 3 2 1 5 5 H 1.48502 * 109.47297 * 29.99390 * 3 2 1 6 6 H 1.48493 * 109.47253 * 149.99845 * 3 2 1 7 7 C 1.37874 * 119.99773 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00192 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99960 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.46833 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.54255 * 54.82670 * 10 9 7 12 12 C 1.53177 * 109.54146 * 294.55655 * 10 9 7 13 13 C 1.53093 * 109.16140 * 183.15445 * 12 10 9 14 14 O 1.42910 * 109.41492 * 57.60704 * 13 12 10 15 15 C 1.43032 * 114.13215 * 298.84120 * 14 13 12 16 16 C 1.53094 * 109.34581 * 61.11793 * 15 14 13 17 17 H 1.08994 * 109.52389 * 182.48033 * 16 15 14 18 18 O 1.42903 * 109.51734 * 62.35845 * 16 15 14 19 19 H 0.96998 * 119.99747 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47085 * 60.00463 * 9 7 2 21 21 H 1.08994 * 109.47373 * 299.99677 * 9 7 2 22 22 H 1.09007 * 109.52371 * 303.05563 * 12 10 9 23 23 H 1.08999 * 109.52132 * 63.25031 * 12 10 9 24 24 H 1.08996 * 109.48032 * 177.58863 * 13 12 10 25 25 H 1.09001 * 109.48261 * 297.61662 * 13 12 10 26 26 H 1.08995 * 109.46431 * 301.19008 * 15 14 13 27 27 H 1.08998 * 109.56677 * 181.10844 * 15 14 13 28 28 H 0.96700 * 114.00311 * 60.12841 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 1 2.9313 -3.5544 0.8420 12 6 3.0352 -3.6623 -1.3105 13 6 3.9707 -4.8739 -1.3338 14 8 3.2031 -6.0697 -1.1815 15 6 2.4795 -6.1473 0.0498 16 6 1.4850 -4.9860 0.1276 17 1 0.9630 -5.0169 1.0840 18 8 0.5381 -5.0960 -0.9370 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8902 22 1 2.3442 -3.7195 -2.1517 23 1 3.6227 -2.7470 -1.3821 24 1 4.5043 -4.9030 -2.2837 25 1 4.6875 -4.7955 -0.5164 26 1 3.1766 -6.0855 0.8853 27 1 1.9387 -7.0926 0.0964 28 1 0.0212 -5.9131 -0.9208 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259562937.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:38 Heat of formation + Delta-G solvation = -113.968403 kcal Electronic energy + Delta-G solvation = -11907.681409 eV Core-core repulsion = 9730.064356 eV Total energy + Delta-G solvation = -2177.617053 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.20126 -35.69215 -34.01678 -31.97526 -29.77380 -27.82459 -24.43866 -22.84370 -21.35409 -19.12692 -16.88550 -16.18228 -15.81156 -15.22572 -14.64460 -14.35835 -13.80820 -12.90955 -12.58313 -12.13498 -11.92131 -11.53202 -11.17940 -10.86726 -10.69290 -10.37725 -10.07901 -9.88885 -9.62486 -9.43879 -8.92580 -8.56956 -8.29565 -5.94669 -3.96775 3.33797 3.39996 3.42551 4.17735 4.48663 4.86490 5.19438 5.28014 5.40157 5.53151 5.63541 5.78605 5.81273 5.89930 6.04184 6.41680 6.55769 6.76022 7.07864 7.16944 7.51500 7.73248 7.93156 8.10276 8.20376 8.47508 9.10478 9.66197 11.16572 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.062988 B = 0.011057 C = 0.009944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.423009 B = 2531.709844 C = 2815.197129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.034 3.966 10 C -0.076 4.076 11 H 0.066 0.934 12 C -0.135 4.135 13 C 0.058 3.942 14 O -0.383 6.383 15 C 0.030 3.970 16 C 0.074 3.926 17 H 0.055 0.945 18 O -0.544 6.544 19 H 0.259 0.741 20 H 0.028 0.972 21 H 0.012 0.988 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.725 -9.843 0.246 10.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.556 4.556 8 H 0.072 0.928 9 C -0.003 4.003 10 C -0.095 4.095 11 H 0.084 0.916 12 C -0.173 4.173 13 C -0.018 4.018 14 O -0.301 6.301 15 C -0.047 4.047 16 C 0.015 3.985 17 H 0.073 0.927 18 O -0.347 6.347 19 H 0.069 0.931 20 H 0.046 0.954 21 H 0.030 0.970 22 H 0.091 0.909 23 H 0.096 0.904 24 H 0.104 0.896 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 4.827 -9.271 -0.046 10.452 hybrid contribution 0.204 0.643 0.465 0.819 sum 5.031 -8.628 0.419 9.996 Atomic orbital electron populations 1.69980 1.06027 1.26424 1.50938 1.25019 0.94808 0.99127 0.95526 0.86640 0.79812 0.83741 0.78069 1.20701 1.21291 1.19968 1.21269 0.92866 0.91134 1.50366 0.92753 1.19025 0.93356 0.90173 0.97697 1.21311 0.97692 0.93734 0.96746 0.91586 1.22070 0.98673 0.97145 0.99367 1.22711 0.93073 0.85317 1.00739 1.87867 1.63579 1.40253 1.38447 1.23328 0.94932 0.99109 0.87334 1.22605 0.89574 0.96412 0.89941 0.92696 1.86702 1.53520 1.43539 1.50924 0.93095 0.95409 0.96989 0.90932 0.90449 0.89641 0.93992 0.92963 0.89592 0.79303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.45 13.29 55.43 0.74 -26.71 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 15 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 15 7 C -0.52 -14.74 8.46 -34.44 -0.29 -15.03 15 8 H 0.05 1.49 7.09 -52.49 -0.37 1.11 15 9 C 0.03 0.92 4.20 -27.88 -0.12 0.80 15 10 C -0.08 -1.61 2.06 -90.43 -0.19 -1.80 15 11 H 0.07 1.35 8.14 -51.93 -0.42 0.93 15 12 C -0.13 -2.67 5.03 -26.59 -0.13 -2.81 15 13 C 0.06 0.95 6.84 37.21 0.25 1.20 15 14 O -0.38 -6.53 10.70 -42.73 -0.46 -6.98 15 15 C 0.03 0.45 6.50 37.21 0.24 0.69 15 16 C 0.07 1.31 3.29 -26.59 -0.09 1.23 15 17 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 18 O -0.54 -10.11 12.05 -42.73 -0.51 -10.63 15 19 H 0.26 7.50 8.31 -40.82 -0.34 7.16 15 20 H 0.03 0.81 7.78 -51.93 -0.40 0.41 15 21 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 15 22 H 0.07 1.57 7.83 -51.92 -0.41 1.17 15 23 H 0.08 1.57 7.09 -51.93 -0.37 1.21 15 24 H 0.09 1.24 8.14 -51.93 -0.42 0.81 15 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 15 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 27 H 0.09 1.05 8.14 -51.93 -0.42 0.62 15 28 H 0.36 4.80 9.08 45.56 0.41 5.21 15 LS Contribution 232.90 15.07 3.51 3.51 Total: -1.00 -32.40 232.90 -5.39 -37.79 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -3.23 Total: 0.35 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -0.42 Total: -14.18 kcal Atomic # 7 Polarization: -27.45 SS G_CDS: 0.74 Total: -26.71 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.97 Total: -17.61 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -32.40 -5.39 -37.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259562937.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.179 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds