Wall clock time and date at job start Mon Mar 30 2020 02:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.54197 * 305.17383 * 10 9 7 12 12 C 1.53175 * 109.54684 * 65.43803 * 10 9 7 13 13 C 1.53087 * 109.16717 * 176.85041 * 12 10 9 14 14 O 1.42904 * 109.41071 * 302.39114 * 13 12 10 15 15 C 1.42903 * 114.09617 * 61.16233 * 14 13 12 16 16 C 1.53091 * 109.41379 * 298.83616 * 15 14 13 17 17 H 1.09007 * 109.57350 * 297.67692 * 16 15 14 18 18 O 1.42900 * 109.52657 * 177.52018 * 16 15 14 19 19 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 21 21 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 22 22 H 1.09009 * 109.52532 * 296.75865 * 12 10 9 23 23 H 1.08998 * 109.52313 * 56.94050 * 12 10 9 24 24 H 1.08996 * 109.48450 * 182.41307 * 13 12 10 25 25 H 1.09001 * 109.48131 * 62.37154 * 13 12 10 26 26 H 1.09008 * 109.48076 * 178.85909 * 15 14 13 27 27 H 1.09002 * 109.49568 * 58.82713 * 15 14 13 28 28 H 0.96697 * 114.00219 * 60.31239 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 1 3.5847 -3.1786 0.8375 12 6 3.6270 -3.3184 -1.3151 13 6 4.2084 -4.7343 -1.3410 14 8 5.6277 -4.6679 -1.1882 15 6 6.0551 -4.0829 0.0436 16 6 5.5479 -2.6407 0.1250 17 1 5.9820 -2.0546 -0.6852 18 8 5.9247 -2.0721 1.3807 19 1 -0.4850 0.8401 0.0004 20 1 3.8751 -0.6798 -0.8895 21 1 3.8745 -0.6809 0.8904 22 1 2.5405 -3.3694 -1.3873 23 1 4.0222 -2.7470 -2.1550 24 1 3.9671 -5.2091 -2.2919 25 1 3.7818 -5.3174 -0.5247 26 1 7.1442 -4.0883 0.0900 27 1 5.6529 -4.6573 0.8780 28 1 6.8798 -2.0426 1.5284 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259562955.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:39 Heat of formation + Delta-G solvation = -112.849951 kcal Electronic energy + Delta-G solvation = -11866.632206 eV Core-core repulsion = 9689.063654 eV Total energy + Delta-G solvation = -2177.568553 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.30322 -36.19027 -34.21213 -32.06048 -29.74489 -28.38070 -24.47561 -22.86885 -21.11896 -19.40896 -17.11666 -16.77310 -15.89593 -15.54335 -14.66384 -14.36826 -13.63333 -12.97685 -12.70087 -12.66077 -11.99957 -11.89404 -11.40688 -10.90008 -10.78357 -10.40951 -10.10239 -9.86430 -9.82665 -9.55938 -9.05596 -8.81259 -8.48990 -6.01082 -3.97970 3.34921 3.41343 3.46542 3.98596 4.49461 4.69181 5.09848 5.12594 5.31205 5.40888 5.50346 5.56133 5.71766 5.91060 5.99183 6.21999 6.36884 6.67648 6.82980 6.90116 7.31270 7.37629 7.49337 7.82519 7.97123 8.56561 9.02858 9.62274 11.12238 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.052440 B = 0.012304 C = 0.010644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.811634 B = 2275.164131 C = 2630.043122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.267 1.267 6 H -0.289 1.289 7 C -0.516 4.516 8 H 0.072 0.928 9 C -0.005 4.005 10 C -0.067 4.067 11 H 0.070 0.930 12 C -0.139 4.139 13 C 0.055 3.945 14 O -0.385 6.385 15 C 0.033 3.967 16 C 0.072 3.928 17 H 0.058 0.942 18 O -0.553 6.553 19 H 0.262 0.738 20 H 0.013 0.987 21 H 0.022 0.978 22 H 0.092 0.908 23 H 0.066 0.934 24 H 0.091 0.909 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.337 -6.299 -1.002 13.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.191 1.191 6 H -0.215 1.215 7 C -0.553 4.553 8 H 0.090 0.910 9 C -0.042 4.042 10 C -0.086 4.086 11 H 0.088 0.912 12 C -0.177 4.177 13 C -0.021 4.021 14 O -0.304 6.304 15 C -0.044 4.044 16 C 0.012 3.988 17 H 0.076 0.924 18 O -0.357 6.357 19 H 0.072 0.928 20 H 0.031 0.969 21 H 0.041 0.959 22 H 0.110 0.890 23 H 0.084 0.916 24 H 0.109 0.891 25 H 0.067 0.933 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 10.645 -6.194 -1.088 12.364 hybrid contribution 0.754 0.992 0.168 1.257 sum 11.399 -5.202 -0.919 12.564 Atomic orbital electron populations 1.69918 1.06260 1.26796 1.51517 1.25012 0.94709 0.99144 0.94660 0.86772 0.80281 0.83657 0.78527 1.20311 1.19123 1.21528 1.21140 0.89426 0.94338 1.50442 0.90983 1.19556 0.96972 0.91079 0.96624 1.21090 0.90035 1.00334 0.97139 0.91200 1.22184 1.02951 0.94500 0.98019 1.22771 0.80393 0.97546 1.01430 1.87858 1.22937 1.81400 1.38240 1.23290 0.99378 0.94431 0.87321 1.22683 0.98164 0.92142 0.85770 0.92443 1.86671 1.27094 1.84253 1.37707 0.92829 0.96907 0.95944 0.88982 0.91562 0.89102 0.93325 0.89653 0.92736 0.78807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.23 13.96 55.43 0.77 -27.45 15 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 15 3 Si 0.88 22.40 27.47 -169.99 -4.67 17.73 15 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 15 5 H -0.27 -6.58 6.54 56.52 0.37 -6.21 15 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 15 7 C -0.52 -14.80 9.01 -34.44 -0.31 -15.11 15 8 H 0.07 2.19 7.34 -52.49 -0.39 1.80 15 9 C -0.01 -0.12 3.46 -27.88 -0.10 -0.22 15 10 C -0.07 -1.38 1.94 -90.44 -0.18 -1.56 15 11 H 0.07 1.50 8.14 -51.93 -0.42 1.08 15 12 C -0.14 -2.55 5.18 -26.60 -0.14 -2.69 15 13 C 0.05 0.84 6.84 37.20 0.25 1.09 15 14 O -0.39 -6.13 10.77 -35.23 -0.38 -6.51 15 15 C 0.03 0.48 6.47 37.20 0.24 0.72 15 16 C 0.07 1.22 3.07 -26.60 -0.08 1.14 15 17 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 18 O -0.55 -9.20 12.72 -35.23 -0.45 -9.65 15 19 H 0.26 7.66 8.31 -40.82 -0.34 7.32 15 20 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 15 21 H 0.02 0.58 7.08 -51.93 -0.37 0.21 15 22 H 0.09 1.82 7.09 -51.92 -0.37 1.45 15 23 H 0.07 1.22 8.14 -51.93 -0.42 0.80 15 24 H 0.09 1.19 8.14 -51.93 -0.42 0.77 15 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 26 H 0.09 0.99 8.14 -51.92 -0.42 0.57 15 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 15 28 H 0.37 3.99 9.09 45.56 0.41 4.40 15 LS Contribution 230.21 15.07 3.47 3.47 Total: -1.00 -32.42 230.21 -4.86 -37.29 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -3.21 Total: -0.09 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -0.40 Total: -14.79 kcal Atomic # 7 Polarization: -28.23 SS G_CDS: 0.77 Total: -27.45 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.83 Total: -16.15 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.67 Total: 17.73 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -32.42 -4.86 -37.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259562955.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.564 kcal (2) G-P(sol) polarization free energy of solvation -32.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds