Wall clock time and date at job start Mon Mar 30 2020 02:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.54197 * 305.17383 * 10 9 7 12 12 C 1.53175 * 109.54684 * 65.43803 * 10 9 7 13 13 C 1.53087 * 109.16717 * 176.85041 * 12 10 9 14 14 O 1.42904 * 109.41071 * 302.39114 * 13 12 10 15 15 C 1.42903 * 114.09617 * 61.16233 * 14 13 12 16 16 C 1.53091 * 109.41379 * 298.83616 * 15 14 13 17 17 H 1.09007 * 109.57350 * 297.67692 * 16 15 14 18 18 O 1.42900 * 109.52657 * 177.52018 * 16 15 14 19 19 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 21 21 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 22 22 H 1.09009 * 109.52532 * 296.75865 * 12 10 9 23 23 H 1.08998 * 109.52313 * 56.94050 * 12 10 9 24 24 H 1.08996 * 109.48450 * 182.41307 * 13 12 10 25 25 H 1.09001 * 109.48131 * 62.37154 * 13 12 10 26 26 H 1.09008 * 109.48076 * 178.85909 * 15 14 13 27 27 H 1.09002 * 109.49568 * 58.82713 * 15 14 13 28 28 H 0.96697 * 114.00219 * 60.31239 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 1 3.5847 -3.1786 0.8375 12 6 3.6270 -3.3184 -1.3151 13 6 4.2084 -4.7343 -1.3410 14 8 5.6277 -4.6679 -1.1882 15 6 6.0551 -4.0829 0.0436 16 6 5.5479 -2.6407 0.1250 17 1 5.9820 -2.0546 -0.6852 18 8 5.9247 -2.0721 1.3807 19 1 -0.4850 0.8401 0.0004 20 1 3.8751 -0.6798 -0.8895 21 1 3.8745 -0.6809 0.8904 22 1 2.5405 -3.3694 -1.3873 23 1 4.0222 -2.7470 -2.1550 24 1 3.9671 -5.2091 -2.2919 25 1 3.7818 -5.3174 -0.5247 26 1 7.1442 -4.0883 0.0900 27 1 5.6529 -4.6573 0.8780 28 1 6.8798 -2.0426 1.5284 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259562955.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:39 Heat of formation + Delta-G solvation = -138.327518 kcal Electronic energy + Delta-G solvation = -11867.736997 eV Core-core repulsion = 9689.063654 eV Total energy + Delta-G solvation = -2178.673343 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.62445 -37.46250 -35.97226 -34.10771 -31.08706 -30.14990 -26.19466 -24.20824 -22.87383 -20.96071 -18.98739 -18.35345 -17.14065 -16.88304 -16.39052 -15.91371 -15.23465 -14.78342 -14.31207 -14.18656 -13.77005 -13.34915 -13.02953 -12.54946 -12.50550 -12.18003 -11.77827 -11.57422 -11.35975 -11.26676 -10.93663 -10.76107 -10.19918 -8.29841 -6.32052 1.33502 1.34013 1.46560 2.34901 2.82661 3.05367 3.46108 3.82169 3.86683 3.97715 4.23547 4.28000 4.43629 4.62790 4.76445 4.77816 4.91845 5.05279 5.15943 5.29226 5.39581 5.58783 5.67185 6.15316 6.28249 6.73781 6.97201 7.31793 8.86599 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.052440 B = 0.012304 C = 0.010644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.811634 B = 2275.164131 C = 2630.043122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.271 1.271 5 H -0.252 1.252 6 H -0.281 1.281 7 C -0.522 4.522 8 H 0.038 0.962 9 C 0.001 3.999 10 C -0.072 4.072 11 H 0.051 0.949 12 C -0.136 4.136 13 C 0.062 3.938 14 O -0.389 6.389 15 C 0.037 3.963 16 C 0.079 3.921 17 H 0.061 0.939 18 O -0.573 6.573 19 H 0.266 0.734 20 H 0.014 0.986 21 H 0.013 0.987 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.116 0.884 25 H 0.054 0.946 26 H 0.123 0.877 27 H 0.057 0.943 28 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.710 -6.303 -1.223 15.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.771 3.229 4 H -0.196 1.196 5 H -0.176 1.176 6 H -0.207 1.207 7 C -0.560 4.560 8 H 0.056 0.944 9 C -0.036 4.036 10 C -0.091 4.091 11 H 0.069 0.931 12 C -0.174 4.174 13 C -0.014 4.014 14 O -0.308 6.308 15 C -0.040 4.040 16 C 0.019 3.981 17 H 0.079 0.921 18 O -0.381 6.381 19 H 0.074 0.926 20 H 0.032 0.968 21 H 0.032 0.968 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.134 0.866 25 H 0.073 0.927 26 H 0.141 0.859 27 H 0.075 0.925 28 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 13.052 -6.213 -1.305 14.514 hybrid contribution -0.026 0.949 0.278 0.989 sum 13.026 -5.264 -1.027 14.087 Atomic orbital electron populations 1.70059 1.08069 1.28004 1.53011 1.25952 0.95592 1.03276 0.94412 0.85702 0.79402 0.78792 0.78995 1.19587 1.17557 1.20680 1.21448 0.91722 0.93136 1.49669 0.94383 1.19453 0.94105 0.94143 0.95941 1.21046 0.93147 0.97370 0.97549 0.93073 1.22102 1.01577 0.96807 0.96873 1.22742 0.80294 0.95233 1.03127 1.87865 1.22698 1.81278 1.38983 1.23372 1.01478 0.92211 0.86899 1.22486 0.95159 0.94260 0.86153 0.92114 1.86605 1.29865 1.84359 1.37300 0.92563 0.96808 0.96826 0.91542 0.91629 0.86640 0.92720 0.85907 0.92510 0.75737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.64 13.96 21.45 0.30 -60.34 15 2 C 0.00 0.25 5.47 84.66 0.46 0.72 15 3 Si 0.95 46.11 27.47 68.60 1.88 48.00 15 4 H -0.27 -12.82 7.11 99.48 0.71 -12.11 15 5 H -0.25 -11.55 6.54 99.48 0.65 -10.90 15 6 H -0.28 -13.24 7.11 99.48 0.71 -12.53 15 7 C -0.52 -30.76 9.01 25.60 0.23 -30.53 15 8 H 0.04 2.43 7.34 -2.91 -0.02 2.41 15 9 C 0.00 0.05 3.46 29.85 0.10 0.15 15 10 C -0.07 -2.94 1.94 -10.68 -0.02 -2.96 15 11 H 0.05 2.23 8.14 -2.38 -0.02 2.21 15 12 C -0.14 -4.95 5.18 30.68 0.16 -4.79 15 13 C 0.06 1.78 6.84 72.01 0.49 2.27 15 14 O -0.39 -11.11 10.77 -148.98 -1.60 -12.72 15 15 C 0.04 0.95 6.47 72.01 0.47 1.41 15 16 C 0.08 2.49 3.07 30.68 0.09 2.58 15 17 H 0.06 1.89 8.14 -2.38 -0.02 1.87 15 18 O -0.57 -17.59 12.72 -148.98 -1.89 -19.49 15 19 H 0.27 15.81 8.31 -92.70 -0.77 15.04 15 20 H 0.01 0.67 7.20 -2.39 -0.02 0.65 15 21 H 0.01 0.69 7.08 -2.39 -0.02 0.67 15 22 H 0.07 2.72 7.09 -2.38 -0.02 2.71 15 23 H 0.06 2.36 8.14 -2.39 -0.02 2.34 15 24 H 0.12 2.73 8.14 -2.39 -0.02 2.71 15 25 H 0.05 1.50 8.14 -2.39 -0.02 1.48 15 26 H 0.12 2.25 8.14 -2.38 -0.02 2.23 15 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 15 28 H 0.39 7.17 9.09 -74.06 -0.67 6.50 15 Total: -1.00 -70.09 230.21 1.09 -69.00 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 0.41 Total: 6.70 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: 1.99 Total: -31.15 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.30 Total: -60.34 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -3.50 Total: -32.20 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.88 Total: 48.00 kcal Total: -70.09 1.09 -69.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259562955.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.324 kcal (2) G-P(sol) polarization free energy of solvation -70.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds