Wall clock time and date at job start Mon Mar 30 2020 02:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00303 * 2 1 4 4 H 1.48503 * 109.46856 * 239.99779 * 3 2 1 5 5 H 1.48498 * 109.47284 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47292 * 119.99785 * 3 2 1 7 7 C 1.37878 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47089 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.52314 * 54.99679 * 10 9 7 12 12 C 1.53095 * 109.52022 * 294.87296 * 10 9 7 13 13 O 1.42900 * 109.41084 * 182.42336 * 12 10 9 14 14 C 1.42909 * 114.10163 * 61.15623 * 13 12 10 15 15 C 1.53092 * 109.41369 * 298.84292 * 14 13 12 16 16 C 1.53170 * 109.16424 * 57.60525 * 15 14 13 17 17 H 1.09009 * 109.54383 * 62.88558 * 16 15 14 18 18 O 1.42900 * 109.54399 * 183.14951 * 16 15 14 19 19 H 0.97004 * 119.99006 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47684 * 59.99604 * 9 7 2 21 21 H 1.09001 * 109.47253 * 299.99438 * 9 7 2 22 22 H 1.09001 * 109.48126 * 302.40029 * 12 10 9 23 23 H 1.08993 * 109.48063 * 62.43902 * 12 10 9 24 24 H 1.09001 * 109.47365 * 58.82217 * 14 13 12 25 25 H 1.08998 * 109.48047 * 178.85506 * 14 13 12 26 26 H 1.08998 * 109.51601 * 177.51225 * 15 14 13 27 27 H 1.08993 * 109.52203 * 297.63544 * 15 14 13 28 28 H 0.96695 * 114.00106 * 299.55588 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9298 -3.5561 0.8421 12 6 3.0389 -3.6566 -1.3086 13 8 3.9266 -4.7762 -1.3304 14 6 3.2693 -6.0435 -1.2670 15 6 2.4848 -6.1449 0.0437 16 6 1.4855 -4.9867 0.1225 17 1 0.7655 -5.0704 -0.6917 18 8 0.8000 -5.0311 1.3755 19 1 -0.4849 0.8402 -0.0004 20 1 0.6245 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8903 22 1 2.3506 -3.7220 -2.1513 23 1 3.6151 -2.7343 -1.3804 24 1 2.5841 -6.1400 -2.1092 25 1 4.0116 -6.8405 -1.3090 26 1 1.9473 -7.0926 0.0740 27 1 3.1744 -6.0901 0.8860 28 1 0.2969 -5.8441 1.5200 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259572025.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:41 Heat of formation + Delta-G solvation = -116.661554 kcal Electronic energy + Delta-G solvation = -11830.381980 eV Core-core repulsion = 9652.648143 eV Total energy + Delta-G solvation = -2177.733836 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.14842 -36.13843 -33.71652 -31.64556 -31.09441 -26.83967 -24.02358 -23.63348 -21.15372 -19.42155 -17.03035 -16.30808 -15.57961 -15.45027 -14.50177 -14.37194 -13.64280 -13.21317 -12.70413 -12.22939 -12.08614 -11.40711 -11.19205 -10.94761 -10.81814 -10.46301 -10.09446 -10.06954 -9.62965 -9.27091 -8.93210 -8.89308 -8.29879 -5.96445 -3.98944 3.36183 3.40312 3.43143 4.30348 4.48451 4.68352 5.05778 5.24616 5.30495 5.39393 5.56479 5.70186 5.87336 5.94984 6.09292 6.23083 6.30440 6.68362 6.83786 7.00710 7.63791 7.73382 7.87810 8.04306 8.11739 8.44128 9.07632 9.64637 11.14742 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.055058 B = 0.011316 C = 0.009876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.435909 B = 2473.873097 C = 2834.543924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.033 3.967 10 C -0.107 4.107 11 H 0.072 0.928 12 C 0.074 3.926 13 O -0.392 6.392 14 C 0.066 3.934 15 C -0.188 4.188 16 C 0.106 3.894 17 H 0.049 0.951 18 O -0.554 6.554 19 H 0.261 0.739 20 H 0.013 0.987 21 H 0.030 0.970 22 H 0.046 0.954 23 H 0.108 0.892 24 H 0.045 0.955 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.270 -10.816 -1.829 11.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.005 4.005 10 C -0.126 4.126 11 H 0.090 0.910 12 C -0.001 4.001 13 O -0.311 6.311 14 C -0.012 4.012 15 C -0.227 4.227 16 C 0.047 3.953 17 H 0.067 0.933 18 O -0.357 6.357 19 H 0.070 0.930 20 H 0.031 0.969 21 H 0.048 0.952 22 H 0.064 0.936 23 H 0.126 0.874 24 H 0.064 0.936 25 H 0.105 0.895 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 3.591 -10.071 -1.781 10.840 hybrid contribution -0.201 0.293 -0.008 0.356 sum 3.390 -9.778 -1.790 10.502 Atomic orbital electron populations 1.69968 1.06069 1.26641 1.50693 1.25015 0.94820 0.99196 0.95320 0.86672 0.79588 0.83194 0.78648 1.20216 1.21334 1.20226 1.21229 0.92943 0.91032 1.50802 0.92600 1.19033 0.93380 0.90236 0.97803 1.21873 0.98554 0.94236 0.97920 0.90950 1.22769 0.92780 0.88409 0.96192 1.87893 1.34638 1.14031 1.94569 1.22403 0.96285 0.86949 0.95531 1.22981 1.00287 0.99322 1.00060 1.21984 0.92142 0.95500 0.85633 0.93288 1.86686 1.67844 1.43131 1.38056 0.92985 0.96861 0.95168 0.93609 0.87358 0.93624 0.89536 0.91631 0.90563 0.79111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.27 13.29 55.43 0.74 -26.53 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 15 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 15 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 15 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 7 C -0.52 -14.86 8.44 -34.44 -0.29 -15.15 15 8 H 0.06 1.54 7.07 -52.49 -0.37 1.16 15 9 C 0.03 0.86 4.40 -27.88 -0.12 0.74 15 10 C -0.11 -2.32 2.06 -90.48 -0.19 -2.51 15 11 H 0.07 1.68 8.14 -51.93 -0.42 1.25 15 12 C 0.07 1.47 5.90 37.21 0.22 1.69 15 13 O -0.39 -7.11 10.77 -35.23 -0.38 -7.49 15 14 C 0.07 0.94 6.84 37.21 0.25 1.19 15 15 C -0.19 -2.72 5.77 -26.60 -0.15 -2.87 15 16 C 0.11 1.91 2.96 -26.55 -0.08 1.83 15 17 H 0.05 0.86 8.14 -51.92 -0.42 0.44 15 18 O -0.55 -10.14 12.72 -35.23 -0.45 -10.59 15 19 H 0.26 7.50 8.31 -40.82 -0.34 7.16 15 20 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 15 21 H 0.03 0.88 7.66 -51.93 -0.40 0.48 15 22 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 23 H 0.11 2.24 7.04 -51.93 -0.37 1.88 15 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 15 25 H 0.09 1.02 8.14 -51.93 -0.42 0.59 15 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 27 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 28 H 0.36 4.58 9.09 45.56 0.41 4.99 15 LS Contribution 233.74 15.07 3.52 3.52 Total: -1.00 -31.96 233.74 -5.28 -37.24 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -3.24 Total: 0.47 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -0.45 Total: -13.49 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.74 Total: -26.53 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.83 Total: -18.08 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -31.96 -5.28 -37.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259572025.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.424 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds