Wall clock time and date at job start Mon Mar 30 2020 02:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00303 * 2 1 4 4 H 1.48503 * 109.46856 * 239.99779 * 3 2 1 5 5 H 1.48498 * 109.47284 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47292 * 119.99785 * 3 2 1 7 7 C 1.37878 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47089 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.52314 * 54.99679 * 10 9 7 12 12 C 1.53095 * 109.52022 * 294.87296 * 10 9 7 13 13 O 1.42900 * 109.41084 * 182.42336 * 12 10 9 14 14 C 1.42909 * 114.10163 * 61.15623 * 13 12 10 15 15 C 1.53092 * 109.41369 * 298.84292 * 14 13 12 16 16 C 1.53170 * 109.16424 * 57.60525 * 15 14 13 17 17 H 1.09009 * 109.54383 * 62.88558 * 16 15 14 18 18 O 1.42900 * 109.54399 * 183.14951 * 16 15 14 19 19 H 0.97004 * 119.99006 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47684 * 59.99604 * 9 7 2 21 21 H 1.09001 * 109.47253 * 299.99438 * 9 7 2 22 22 H 1.09001 * 109.48126 * 302.40029 * 12 10 9 23 23 H 1.08993 * 109.48063 * 62.43902 * 12 10 9 24 24 H 1.09001 * 109.47365 * 58.82217 * 14 13 12 25 25 H 1.08998 * 109.48047 * 178.85506 * 14 13 12 26 26 H 1.08998 * 109.51601 * 177.51225 * 15 14 13 27 27 H 1.08993 * 109.52203 * 297.63544 * 15 14 13 28 28 H 0.96695 * 114.00106 * 299.55588 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9298 -3.5561 0.8421 12 6 3.0389 -3.6566 -1.3086 13 8 3.9266 -4.7762 -1.3304 14 6 3.2693 -6.0435 -1.2670 15 6 2.4848 -6.1449 0.0437 16 6 1.4855 -4.9867 0.1225 17 1 0.7655 -5.0704 -0.6917 18 8 0.8000 -5.0311 1.3755 19 1 -0.4849 0.8402 -0.0004 20 1 0.6245 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8903 22 1 2.3506 -3.7220 -2.1513 23 1 3.6151 -2.7343 -1.3804 24 1 2.5841 -6.1400 -2.1092 25 1 4.0116 -6.8405 -1.3090 26 1 1.9473 -7.0926 0.0740 27 1 3.1744 -6.0901 0.8860 28 1 0.2969 -5.8441 1.5200 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259572025.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:41 Heat of formation + Delta-G solvation = -141.296770 kcal Electronic energy + Delta-G solvation = -11831.450243 eV Core-core repulsion = 9652.648143 eV Total energy + Delta-G solvation = -2178.802100 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.58191 -37.54954 -35.71046 -33.53726 -32.44291 -28.77810 -25.72146 -25.18442 -22.77930 -21.01479 -18.57910 -18.34840 -17.00979 -16.91125 -16.39908 -15.80174 -15.22925 -14.59334 -14.20531 -14.06404 -13.86740 -13.25721 -12.89782 -12.59171 -12.54593 -12.22041 -11.82784 -11.71081 -11.36723 -10.90456 -10.73518 -10.60708 -10.37685 -8.19219 -6.30321 1.39992 1.43327 1.51067 2.41272 2.96592 3.14764 3.36968 3.82417 3.90283 4.06059 4.17949 4.30948 4.57699 4.66545 4.79004 4.84186 4.92057 5.07278 5.17778 5.27261 5.49549 5.70818 5.82964 6.23204 6.28930 6.84008 6.99586 7.38501 8.92553 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.055058 B = 0.011316 C = 0.009876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.435909 B = 2473.873097 C = 2834.543924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.042 3.958 10 C -0.105 4.105 11 H 0.051 0.949 12 C 0.086 3.914 13 O -0.403 6.403 14 C 0.055 3.945 15 C -0.176 4.176 16 C 0.105 3.895 17 H 0.053 0.947 18 O -0.580 6.580 19 H 0.263 0.737 20 H -0.007 1.007 21 H -0.009 1.009 22 H 0.051 0.949 23 H 0.092 0.908 24 H 0.061 0.939 25 H 0.120 0.880 26 H 0.106 0.894 27 H 0.067 0.933 28 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.315 -11.810 -2.325 12.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.578 4.578 8 H 0.079 0.921 9 C 0.005 3.995 10 C -0.124 4.124 11 H 0.070 0.930 12 C 0.010 3.990 13 O -0.322 6.322 14 C -0.021 4.021 15 C -0.213 4.213 16 C 0.047 3.953 17 H 0.071 0.929 18 O -0.388 6.388 19 H 0.072 0.928 20 H 0.011 0.989 21 H 0.010 0.990 22 H 0.070 0.930 23 H 0.110 0.890 24 H 0.080 0.920 25 H 0.138 0.862 26 H 0.124 0.876 27 H 0.086 0.914 28 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 4.641 -11.101 -2.277 12.246 hybrid contribution -0.573 0.522 0.176 0.795 sum 4.068 -10.579 -2.102 11.528 Atomic orbital electron populations 1.70107 1.07850 1.27784 1.51623 1.25978 0.95735 1.03329 0.94709 0.85521 0.78297 0.78137 0.79239 1.18770 1.20799 1.19497 1.21638 0.93434 0.92175 1.50592 0.92081 1.18822 0.93645 0.92185 0.94820 1.21730 0.97553 0.94731 0.98371 0.93036 1.22441 0.92513 0.88997 0.95070 1.87875 1.34776 1.14948 1.94583 1.22792 0.97625 0.85769 0.95933 1.22878 0.99308 0.99304 0.99850 1.21909 0.92878 0.94831 0.85703 0.92859 1.86623 1.68574 1.45413 1.38192 0.92795 0.98893 0.99035 0.93048 0.89034 0.92032 0.86160 0.87562 0.91399 0.76214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.14 13.29 21.45 0.28 -57.85 15 2 C 0.00 0.01 5.46 84.65 0.46 0.47 15 3 Si 0.96 45.12 29.54 68.60 2.03 47.15 15 4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 15 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 15 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 15 7 C -0.54 -31.47 8.44 25.60 0.22 -31.25 15 8 H 0.06 3.41 7.07 -2.91 -0.02 3.39 15 9 C 0.04 2.34 4.40 29.85 0.13 2.47 15 10 C -0.10 -4.61 2.06 -10.70 -0.02 -4.63 15 11 H 0.05 2.44 8.14 -2.39 -0.02 2.42 15 12 C 0.09 3.38 5.90 72.01 0.42 3.81 15 13 O -0.40 -13.83 10.77 -148.98 -1.60 -15.43 15 14 C 0.06 1.38 6.84 72.01 0.49 1.87 15 15 C -0.18 -4.51 5.77 30.68 0.18 -4.33 15 16 C 0.11 3.68 2.96 30.71 0.09 3.77 15 17 H 0.05 1.81 8.14 -2.38 -0.02 1.79 15 18 O -0.58 -20.93 12.72 -148.98 -1.90 -22.83 15 19 H 0.26 15.40 8.31 -92.70 -0.77 14.63 15 20 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 15 21 H -0.01 -0.54 7.66 -2.39 -0.02 -0.56 15 22 H 0.05 1.93 8.14 -2.39 -0.02 1.91 15 23 H 0.09 3.83 7.04 -2.39 -0.02 3.82 15 24 H 0.06 1.38 8.14 -2.39 -0.02 1.36 15 25 H 0.12 2.26 8.14 -2.39 -0.02 2.24 15 26 H 0.11 1.92 8.14 -2.39 -0.02 1.90 15 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 15 28 H 0.39 9.13 9.09 -74.06 -0.67 8.46 15 Total: -1.00 -69.99 233.74 1.25 -68.73 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.47 Total: 8.04 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: 1.97 Total: -27.82 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 0.28 Total: -57.85 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -3.50 Total: -38.26 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -69.99 1.25 -68.73 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259572025.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.562 kcal (2) G-P(sol) polarization free energy of solvation -69.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds