Wall clock time and date at job start Mon Mar 30 2020 02:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99616 * 2 1 4 4 H 1.48505 * 109.47010 * 239.99532 * 3 2 1 5 5 H 1.48501 * 109.47112 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47389 * 119.99830 * 3 2 1 7 7 C 1.37880 * 120.00638 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00141 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99484 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46664 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.52327 * 305.12508 * 10 9 7 12 12 C 1.53091 * 109.52098 * 65.31603 * 10 9 7 13 13 O 1.42904 * 109.41727 * 177.51105 * 12 10 9 14 14 C 1.42905 * 114.09348 * 298.84487 * 13 12 10 15 15 C 1.53092 * 109.41879 * 61.15622 * 14 13 12 16 16 C 1.53178 * 109.16092 * 302.38830 * 15 14 13 17 17 H 1.09002 * 109.54325 * 176.84680 * 16 15 14 18 18 O 1.42898 * 109.61520 * 297.06819 * 16 15 14 19 19 H 0.96998 * 120.00177 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.47130 * 59.99622 * 9 7 2 21 21 H 1.08997 * 109.46953 * 299.99487 * 9 7 2 22 22 H 1.08998 * 109.48401 * 297.49791 * 12 10 9 23 23 H 1.09002 * 109.48309 * 57.51771 * 12 10 9 24 24 H 1.09004 * 109.47995 * 181.14173 * 14 13 12 25 25 H 1.09000 * 109.48167 * 301.15551 * 14 13 12 26 26 H 1.08998 * 109.52177 * 182.48522 * 15 14 13 27 27 H 1.08999 * 109.52045 * 62.29472 * 15 14 13 28 28 H 0.96691 * 114.00850 * 299.77680 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 1 2.9314 -3.5547 -0.8397 12 6 3.0360 -3.6592 1.3116 13 8 3.9228 -4.7795 1.3341 14 6 3.2645 -6.0461 1.2671 15 6 2.4832 -6.1448 -0.0458 16 6 1.4850 -4.9857 -0.1252 17 1 0.9646 -5.0176 -1.0824 18 8 0.5369 -5.0953 0.9383 19 1 -0.4850 0.8400 -0.0004 20 1 0.6248 -2.5571 -0.8896 21 1 0.6243 -2.5567 0.8903 22 1 3.6128 -2.7373 1.3864 23 1 2.3455 -3.7250 2.1525 24 1 4.0060 -6.8439 1.3097 25 1 2.5772 -6.1435 2.1075 26 1 1.9449 -7.0920 -0.0789 27 1 3.1749 -6.0882 -0.8863 28 1 0.0205 -5.9126 0.9223 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259572028.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:42 Heat of formation + Delta-G solvation = -115.506860 kcal Electronic energy + Delta-G solvation = -11917.062023 eV Core-core repulsion = 9739.378258 eV Total energy + Delta-G solvation = -2177.683765 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.19008 -35.85084 -33.71128 -31.60455 -31.01548 -26.80757 -24.19109 -23.68829 -21.10228 -19.22813 -16.63176 -16.23681 -15.72930 -15.45201 -14.49636 -14.19473 -13.96447 -13.03671 -12.68080 -12.11656 -11.67889 -11.53421 -11.36327 -10.92461 -10.82654 -10.45538 -10.10956 -9.88979 -9.76137 -9.19954 -8.93463 -8.68189 -8.29445 -5.95909 -3.98686 3.36164 3.40323 3.43051 4.42853 4.49020 4.74042 5.11820 5.28422 5.33892 5.39801 5.69801 5.72687 5.96230 5.97525 6.21529 6.30422 6.34495 6.73127 6.91215 7.01276 7.70026 7.79893 7.89016 8.07237 8.09490 8.44672 9.08387 9.64969 11.15106 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.062672 B = 0.011156 C = 0.010024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.663351 B = 2509.221855 C = 2792.749169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.035 3.965 10 C -0.106 4.106 11 H 0.074 0.926 12 C 0.076 3.924 13 O -0.396 6.396 14 C 0.068 3.932 15 C -0.188 4.188 16 C 0.104 3.896 17 H 0.052 0.948 18 O -0.553 6.553 19 H 0.260 0.740 20 H 0.015 0.985 21 H 0.028 0.972 22 H 0.100 0.900 23 H 0.052 0.948 24 H 0.080 0.920 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.293 -10.802 0.619 11.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.002 4.002 10 C -0.125 4.125 11 H 0.093 0.907 12 C 0.000 4.000 13 O -0.315 6.315 14 C -0.010 4.010 15 C -0.226 4.226 16 C 0.045 3.955 17 H 0.070 0.930 18 O -0.357 6.357 19 H 0.070 0.930 20 H 0.033 0.967 21 H 0.046 0.954 22 H 0.118 0.882 23 H 0.070 0.930 24 H 0.099 0.901 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 3.590 -10.061 0.788 10.711 hybrid contribution -0.151 0.312 -0.337 0.483 sum 3.438 -9.749 0.451 10.348 Atomic orbital electron populations 1.69964 1.06059 1.26631 1.50661 1.25014 0.94806 0.99175 0.95334 0.86685 0.79596 0.83246 0.78641 1.20276 1.21338 1.20186 1.21258 0.92945 0.91117 1.50839 0.92620 1.18988 0.93284 0.90036 0.97898 1.21882 0.98171 0.94205 0.98225 0.90744 1.22667 0.92610 0.87681 0.97009 1.87858 1.34759 1.14184 1.94676 1.22334 0.95995 0.86663 0.95970 1.22921 1.00249 0.99303 1.00140 1.21998 0.88503 0.95362 0.89591 0.93016 1.86675 1.53809 1.43831 1.51336 0.92990 0.96682 0.95394 0.88202 0.92982 0.90149 0.93206 0.91625 0.90610 0.79194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.27 13.29 55.43 0.74 -26.53 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 15 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 15 7 C -0.52 -14.88 8.44 -34.44 -0.29 -15.17 15 8 H 0.06 1.53 7.08 -52.49 -0.37 1.16 15 9 C 0.04 0.93 4.20 -27.88 -0.12 0.81 15 10 C -0.11 -2.28 2.17 -90.48 -0.20 -2.48 15 11 H 0.07 1.60 8.14 -51.93 -0.42 1.18 15 12 C 0.08 1.59 5.75 37.20 0.21 1.80 15 13 O -0.40 -7.51 10.77 -35.23 -0.38 -7.89 15 14 C 0.07 1.02 6.69 37.21 0.25 1.27 15 15 C -0.19 -2.68 5.84 -26.59 -0.16 -2.83 15 16 C 0.10 1.84 3.27 -26.55 -0.09 1.75 15 17 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 18 O -0.55 -9.74 11.60 -35.23 -0.41 -10.14 15 19 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 20 H 0.01 0.42 8.14 -51.93 -0.42 0.00 15 21 H 0.03 0.80 7.78 -51.93 -0.40 0.40 15 22 H 0.10 2.17 7.05 -51.93 -0.37 1.80 15 23 H 0.05 1.12 7.82 -51.93 -0.41 0.72 15 24 H 0.08 1.01 8.14 -51.93 -0.42 0.59 15 25 H 0.05 0.75 7.82 -51.93 -0.41 0.34 15 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 27 H 0.08 1.06 8.14 -51.93 -0.42 0.64 15 28 H 0.36 4.43 9.09 45.56 0.41 4.84 15 LS Contribution 232.14 15.07 3.50 3.50 Total: -1.00 -31.73 232.14 -5.27 -36.99 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -3.21 Total: 0.48 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -0.48 Total: -13.26 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.74 Total: -26.53 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.79 Total: -18.03 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -31.73 -5.27 -36.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259572028.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.513 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds