Wall clock time and date at job start Mon Mar 30 2020 02:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99767 * 2 1 4 4 H 1.48503 * 109.47047 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46904 * 299.99985 * 3 2 1 6 6 H 1.48497 * 109.47413 * 59.99760 * 3 2 1 7 7 C 1.37878 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99609 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00188 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47005 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.52025 * 54.87840 * 10 9 7 12 12 C 1.53087 * 109.57368 * 294.71574 * 10 9 7 13 13 O 1.42902 * 109.41539 * 182.45602 * 12 10 9 14 14 C 1.42898 * 114.09798 * 61.15720 * 13 12 10 15 15 C 1.53092 * 109.41856 * 298.84282 * 14 13 12 16 16 C 1.53179 * 109.51987 * 174.99892 * 10 9 7 17 17 H 1.08995 * 109.54327 * 296.90498 * 16 10 9 18 18 O 1.42905 * 109.54207 * 57.08522 * 16 10 9 19 19 H 0.97000 * 120.00292 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.47052 * 59.99694 * 9 7 2 21 21 H 1.09003 * 109.47034 * 300.00013 * 9 7 2 22 22 H 1.08996 * 109.48655 * 302.43925 * 12 10 9 23 23 H 1.08998 * 109.48374 * 62.47363 * 12 10 9 24 24 H 1.09007 * 109.47912 * 58.82854 * 14 13 12 25 25 H 1.08999 * 109.48213 * 178.84823 * 14 13 12 26 26 H 1.08999 * 109.52195 * 297.70691 * 15 14 13 27 27 H 1.08994 * 109.52373 * 177.51218 * 15 14 13 28 28 H 0.96696 * 114.00036 * 179.97438 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 1 2.9313 -3.5548 0.8408 12 6 3.0371 -3.6599 -1.3097 13 8 3.9240 -4.7802 -1.3307 14 6 3.2658 -6.0468 -1.2636 15 6 2.4833 -6.1449 0.0485 16 6 1.4849 -4.9857 0.1264 17 1 0.9623 -5.0165 1.0824 18 8 0.5393 -5.0969 -0.9393 19 1 -0.4850 0.8400 -0.0004 20 1 0.6248 -2.5571 -0.8896 21 1 0.6241 -2.5567 0.8903 22 1 2.3476 -3.7265 -2.1513 23 1 3.6140 -2.7382 -1.3844 24 1 2.5792 -6.1446 -2.1046 25 1 4.0074 -6.8445 -1.3052 26 1 3.1741 -6.0877 0.8897 27 1 1.9450 -7.0921 0.0817 28 1 0.0214 -5.9133 -0.9220 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259572031.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:43 Heat of formation + Delta-G solvation = -139.869537 kcal Electronic energy + Delta-G solvation = -11918.329150 eV Core-core repulsion = 9739.588940 eV Total energy + Delta-G solvation = -2178.740210 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.64559 -37.26563 -35.71015 -33.51046 -32.35919 -28.75963 -25.77756 -25.41925 -22.74658 -20.82255 -18.51431 -17.92358 -17.15961 -16.93426 -16.44322 -15.67651 -15.40369 -14.53501 -14.45256 -13.99940 -13.36164 -13.23122 -12.86677 -12.83040 -12.46282 -12.24975 -11.85207 -11.57837 -11.38223 -11.00006 -10.74744 -10.55801 -10.16497 -8.19035 -6.30101 1.39825 1.40350 1.53810 2.41213 3.01884 3.15399 3.45848 3.87396 3.96043 4.10328 4.14113 4.39700 4.60785 4.75326 4.81092 4.87677 4.98581 5.12737 5.18143 5.30023 5.48196 5.70828 5.86885 6.23794 6.33964 6.85440 7.02162 7.38985 8.93051 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.062683 B = 0.011155 C = 0.010023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.582744 B = 2509.569604 C = 2793.000363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.963 3.037 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.539 4.539 8 H 0.062 0.938 9 C 0.045 3.955 10 C -0.106 4.106 11 H 0.072 0.928 12 C 0.089 3.911 13 O -0.405 6.405 14 C 0.056 3.944 15 C -0.175 4.175 16 C 0.105 3.895 17 H 0.054 0.946 18 O -0.576 6.576 19 H 0.263 0.737 20 H -0.006 1.006 21 H -0.013 1.013 22 H 0.038 0.962 23 H 0.083 0.917 24 H 0.051 0.949 25 H 0.115 0.885 26 H 0.081 0.919 27 H 0.105 0.895 28 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.475 -11.836 -0.467 12.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.577 4.577 8 H 0.080 0.920 9 C 0.008 3.992 10 C -0.125 4.125 11 H 0.091 0.909 12 C 0.013 3.987 13 O -0.324 6.324 14 C -0.020 4.020 15 C -0.213 4.213 16 C 0.046 3.954 17 H 0.072 0.928 18 O -0.383 6.383 19 H 0.072 0.928 20 H 0.012 0.988 21 H 0.006 0.994 22 H 0.056 0.944 23 H 0.101 0.899 24 H 0.069 0.931 25 H 0.133 0.867 26 H 0.100 0.900 27 H 0.124 0.876 28 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 4.786 -11.136 -0.636 12.138 hybrid contribution -0.586 0.555 0.273 0.852 sum 4.200 -10.582 -0.363 11.390 Atomic orbital electron populations 1.70122 1.07866 1.27623 1.51836 1.25982 0.95715 1.03349 0.94796 0.85420 0.79161 0.78858 0.77761 1.18488 1.20447 1.20330 1.21735 0.93485 0.92228 1.50237 0.91999 1.18775 0.93544 0.92044 0.94806 1.21743 0.97438 0.94693 0.98578 0.90943 1.22299 0.92099 0.88303 0.96011 1.87835 1.34779 1.15059 1.94743 1.22704 0.97202 0.85483 0.96582 1.22835 0.99423 0.99315 0.99735 1.21881 0.89267 0.94612 0.89644 0.92784 1.86618 1.54502 1.46154 1.51058 0.92838 0.98755 0.99448 0.94370 0.89891 0.93069 0.86682 0.90039 0.87622 0.76359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.23 13.29 21.45 0.28 -57.95 15 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 15 3 Si 0.96 45.12 29.54 68.60 2.03 47.15 15 4 H -0.26 -11.65 7.11 99.48 0.71 -10.94 15 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 7 C -0.54 -31.23 8.45 25.60 0.22 -31.02 15 8 H 0.06 3.44 7.08 -2.91 -0.02 3.42 15 9 C 0.05 2.49 4.20 29.85 0.13 2.61 15 10 C -0.11 -4.57 2.17 -10.70 -0.02 -4.59 15 11 H 0.07 3.12 8.14 -2.39 -0.02 3.10 15 12 C 0.09 3.73 5.75 72.01 0.41 4.15 15 13 O -0.40 -14.70 10.77 -148.98 -1.60 -16.31 15 14 C 0.06 1.53 6.69 72.01 0.48 2.01 15 15 C -0.18 -4.38 5.84 30.69 0.18 -4.20 15 16 C 0.10 3.55 3.28 30.72 0.10 3.65 15 17 H 0.05 1.80 8.14 -2.39 -0.02 1.78 15 18 O -0.58 -19.72 11.59 -148.98 -1.73 -21.44 15 19 H 0.26 15.32 8.31 -92.71 -0.77 14.55 15 20 H -0.01 -0.36 7.78 -2.39 -0.02 -0.38 15 21 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 15 22 H 0.04 1.67 7.82 -2.39 -0.02 1.66 15 23 H 0.08 3.67 7.05 -2.39 -0.02 3.65 15 24 H 0.05 1.39 7.82 -2.38 -0.02 1.37 15 25 H 0.12 2.37 8.14 -2.39 -0.02 2.35 15 26 H 0.08 1.99 8.14 -2.39 -0.02 1.97 15 27 H 0.11 1.86 8.14 -2.39 -0.02 1.84 15 28 H 0.39 8.64 9.09 -74.06 -0.67 7.97 15 Total: -1.00 -69.33 232.13 1.40 -67.93 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 0.47 Total: 7.59 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 1.96 Total: -26.97 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: 0.28 Total: -57.95 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -3.33 Total: -37.75 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -69.33 1.40 -67.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259572031.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.944 kcal (2) G-P(sol) polarization free energy of solvation -69.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds