Wall clock time and date at job start Mon Mar 30 2020 02:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99828 * 2 1 4 4 H 1.48496 * 109.47190 * 239.99565 * 3 2 1 5 5 H 1.48501 * 109.47301 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47013 * 119.99827 * 3 2 1 7 7 C 1.37877 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99956 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99899 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47132 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.56890 * 305.16040 * 10 9 7 12 12 C 1.53086 * 109.52011 * 65.31616 * 10 9 7 13 13 O 1.42905 * 109.41382 * 177.51789 * 12 10 9 14 14 C 1.42905 * 114.09395 * 298.84058 * 13 12 10 15 15 C 1.53095 * 109.41591 * 61.16138 * 14 13 12 16 16 C 1.53169 * 109.52212 * 185.00229 * 10 9 7 17 17 H 1.08996 * 109.62021 * 303.02469 * 16 10 9 18 18 O 1.42903 * 109.54566 * 63.25007 * 16 10 9 19 19 H 0.97005 * 120.00063 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46786 * 60.00347 * 9 7 2 21 21 H 1.09000 * 109.47279 * 300.00206 * 9 7 2 22 22 H 1.09004 * 109.48437 * 57.53485 * 12 10 9 23 23 H 1.09003 * 109.48484 * 297.49672 * 12 10 9 24 24 H 1.08993 * 109.48093 * 301.17263 * 14 13 12 25 25 H 1.09002 * 109.47888 * 181.14106 * 14 13 12 26 26 H 1.08991 * 109.52261 * 182.48507 * 15 14 13 27 27 H 1.08997 * 109.52194 * 62.29292 * 15 14 13 28 28 H 0.96700 * 114.00311 * 179.55581 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0027 11 1 2.9321 -3.5560 -0.8370 12 6 3.0357 -3.6581 1.3138 13 8 3.9225 -4.7785 1.3371 14 6 3.2642 -6.0451 1.2712 15 6 2.4829 -6.1450 -0.0416 16 6 1.4848 -4.9858 -0.1220 17 1 0.7618 -5.0703 0.6893 18 8 0.8025 -5.0288 -1.3768 19 1 -0.4850 0.8401 0.0004 20 1 0.6241 -2.5574 -0.8881 21 1 0.6247 -2.5563 0.8919 22 1 2.3453 -3.7235 2.1547 23 1 3.6127 -2.7363 1.3877 24 1 2.5768 -6.1417 2.1116 25 1 4.0057 -6.8429 1.3145 26 1 1.9446 -7.0921 -0.0739 27 1 3.1746 -6.0891 -0.8822 28 1 0.3045 -5.8442 -1.5261 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259572032.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:44 Heat of formation + Delta-G solvation = -141.298190 kcal Electronic energy + Delta-G solvation = -11831.464305 eV Core-core repulsion = 9652.662144 eV Total energy + Delta-G solvation = -2178.802161 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.58280 -37.54990 -35.71031 -33.53787 -32.44134 -28.77894 -25.72043 -25.18483 -22.77892 -21.01713 -18.57738 -18.34651 -17.01021 -16.91019 -16.39958 -15.80385 -15.22909 -14.59684 -14.20252 -14.06360 -13.86583 -13.25812 -12.89792 -12.59145 -12.54703 -12.22013 -11.82941 -11.71093 -11.36661 -10.90376 -10.73675 -10.60719 -10.37664 -8.19156 -6.30307 1.39969 1.43330 1.51049 2.41262 2.96611 3.14788 3.37001 3.82252 3.90411 4.06042 4.17916 4.30963 4.57744 4.66548 4.78980 4.84214 4.91961 5.07223 5.17662 5.27299 5.49585 5.70847 5.82957 6.23221 6.28882 6.84027 6.99595 7.38528 8.92599 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.055071 B = 0.011313 C = 0.009876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.315494 B = 2474.404606 C = 2834.451025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.042 3.958 10 C -0.105 4.105 11 H 0.051 0.949 12 C 0.086 3.914 13 O -0.403 6.403 14 C 0.055 3.945 15 C -0.176 4.176 16 C 0.105 3.895 17 H 0.053 0.947 18 O -0.581 6.581 19 H 0.263 0.737 20 H -0.009 1.009 21 H -0.007 1.007 22 H 0.051 0.949 23 H 0.092 0.908 24 H 0.061 0.939 25 H 0.120 0.880 26 H 0.106 0.894 27 H 0.067 0.933 28 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.317 -11.817 2.323 12.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.578 4.578 8 H 0.079 0.921 9 C 0.005 3.995 10 C -0.124 4.124 11 H 0.070 0.930 12 C 0.010 3.990 13 O -0.322 6.322 14 C -0.021 4.021 15 C -0.213 4.213 16 C 0.047 3.953 17 H 0.071 0.929 18 O -0.388 6.388 19 H 0.072 0.928 20 H 0.010 0.990 21 H 0.011 0.989 22 H 0.070 0.930 23 H 0.110 0.890 24 H 0.080 0.920 25 H 0.138 0.862 26 H 0.124 0.876 27 H 0.086 0.914 28 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 4.639 -11.107 2.278 12.250 hybrid contribution -0.570 0.522 -0.180 0.793 sum 4.069 -10.585 2.099 11.533 Atomic orbital electron populations 1.70102 1.07850 1.27793 1.51622 1.25975 0.95731 1.03326 0.94708 0.85523 0.78299 0.78145 0.79239 1.19507 1.20798 1.18761 1.21637 0.93433 0.92178 1.50594 0.92085 1.18823 0.93646 0.92186 0.94821 1.21726 0.97551 0.94733 0.98362 0.93019 1.22442 0.92547 0.88980 0.95057 1.87876 1.34793 1.14945 1.94560 1.22790 0.97627 0.85791 0.95915 1.22884 0.99327 0.99293 0.99843 1.21912 0.92912 0.94844 0.85658 0.92873 1.86625 1.69007 1.45076 1.38107 0.92791 0.99029 0.98891 0.93047 0.89035 0.92033 0.86160 0.87550 0.91391 0.76216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.14 13.29 21.45 0.28 -57.86 15 2 C 0.00 0.02 5.46 84.66 0.46 0.48 15 3 Si 0.96 45.12 29.54 68.60 2.03 47.15 15 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 15 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 15 6 H -0.26 -11.68 7.11 99.48 0.71 -10.97 15 7 C -0.54 -31.47 8.45 25.60 0.22 -31.26 15 8 H 0.06 3.40 7.08 -2.91 -0.02 3.38 15 9 C 0.04 2.33 4.39 29.85 0.13 2.46 15 10 C -0.10 -4.60 2.06 -10.71 -0.02 -4.62 15 11 H 0.05 2.44 8.14 -2.38 -0.02 2.43 15 12 C 0.09 3.38 5.90 72.01 0.42 3.81 15 13 O -0.40 -13.82 10.77 -148.98 -1.60 -15.42 15 14 C 0.06 1.38 6.84 72.01 0.49 1.87 15 15 C -0.18 -4.51 5.76 30.69 0.18 -4.33 15 16 C 0.11 3.68 2.96 30.71 0.09 3.77 15 17 H 0.05 1.80 8.14 -2.39 -0.02 1.78 15 18 O -0.58 -20.95 12.72 -148.98 -1.89 -22.84 15 19 H 0.26 15.40 8.31 -92.70 -0.77 14.63 15 20 H -0.01 -0.54 7.65 -2.39 -0.02 -0.56 15 21 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 15 22 H 0.05 1.93 8.14 -2.39 -0.02 1.91 15 23 H 0.09 3.83 7.05 -2.39 -0.02 3.81 15 24 H 0.06 1.38 8.14 -2.39 -0.02 1.36 15 25 H 0.12 2.26 8.14 -2.39 -0.02 2.24 15 26 H 0.11 1.92 8.14 -2.39 -0.02 1.90 15 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 15 28 H 0.39 9.13 9.08 -74.06 -0.67 8.46 15 Total: -1.00 -70.00 233.76 1.25 -68.75 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.47 Total: 8.05 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: 1.97 Total: -27.82 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 0.28 Total: -57.86 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -3.50 Total: -38.26 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -70.00 1.25 -68.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259572032.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.553 kcal (2) G-P(sol) polarization free energy of solvation -69.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds