Wall clock time and date at job start Mon Mar 30 2020 02:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00082 * 2 1 4 4 H 1.48501 * 109.47245 * 269.99988 * 3 2 1 5 5 H 1.48500 * 109.47112 * 30.00252 * 3 2 1 6 6 H 1.48501 * 109.46968 * 149.99915 * 3 2 1 7 7 C 1.37877 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99962 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00139 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47047 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.48089 * 305.02134 * 10 9 7 12 12 O 1.42900 * 109.48139 * 65.06107 * 10 9 7 13 13 C 1.42901 * 114.09876 * 181.13979 * 12 10 9 14 14 C 1.53090 * 109.41276 * 298.83750 * 13 12 10 15 15 C 1.53177 * 109.16478 * 57.61305 * 14 13 12 16 16 C 1.53095 * 109.47666 * 185.00021 * 10 9 7 17 17 H 1.09002 * 109.52170 * 62.50388 * 16 10 9 18 18 O 1.42901 * 109.52374 * 302.37455 * 16 10 9 19 19 H 0.97001 * 120.00293 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.47048 * 59.99878 * 9 7 2 21 21 H 1.08997 * 109.46988 * 300.00143 * 9 7 2 22 22 H 1.09000 * 109.48210 * 58.82276 * 13 12 10 23 23 H 1.08998 * 109.47982 * 178.85989 * 13 12 10 24 24 H 1.09006 * 109.51905 * 177.51337 * 14 13 12 25 25 H 1.08991 * 109.52645 * 297.63832 * 14 13 12 26 26 H 1.08991 * 109.54667 * 183.15091 * 15 14 13 27 27 H 1.08999 * 109.54635 * 62.87780 * 15 14 13 28 28 H 0.96705 * 114.00049 * 180.12278 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0023 11 1 3.5869 -3.1765 0.8390 12 8 3.6442 -3.2745 -1.2241 13 6 4.0509 -4.6411 -1.3187 14 6 5.5778 -4.7238 -1.2464 15 6 6.0549 -4.0827 0.0605 16 6 5.5472 -2.6388 0.1229 17 1 5.8352 -2.1922 1.0747 18 8 6.1155 -1.8848 -0.9498 19 1 -0.4850 0.8400 -0.0004 20 1 3.8752 -0.6805 0.8888 21 1 3.8745 -0.6801 -0.8911 22 1 3.6167 -5.2074 -0.4947 23 1 3.7088 -5.0574 -2.2661 24 1 5.8877 -5.7685 -1.2739 25 1 6.0119 -4.1927 -2.0934 26 1 7.1443 -4.0879 0.0928 27 1 5.6609 -4.6446 0.9073 28 1 7.0816 -1.8454 -0.9343 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259657275.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:33 Heat of formation + Delta-G solvation = -107.370746 kcal Electronic energy + Delta-G solvation = -11959.448650 eV Core-core repulsion = 9782.117693 eV Total energy + Delta-G solvation = -2177.330957 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.18572 -35.68680 -33.34243 -32.27026 -30.94323 -27.77896 -24.55212 -22.96553 -20.64574 -19.77978 -16.73013 -16.62985 -15.71070 -15.22687 -14.59789 -14.43317 -13.84502 -12.77424 -12.66989 -12.28141 -12.09950 -11.80377 -11.50880 -11.15437 -10.82048 -10.48772 -10.18431 -9.79903 -9.58013 -9.35150 -9.14364 -8.64617 -8.41997 -5.92230 -3.88082 3.40709 3.46493 3.50785 4.39401 4.56226 4.76808 4.98748 5.03965 5.14846 5.41545 5.43647 5.64068 5.77896 5.88620 5.93819 6.11741 6.14304 6.25370 6.43465 6.68312 7.20890 7.45525 7.83367 8.01250 8.14804 8.66782 9.14544 9.69866 11.21603 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.058374 B = 0.012476 C = 0.010947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.549455 B = 2243.818421 C = 2557.105081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.508 4.508 8 H 0.073 0.927 9 C -0.004 4.004 10 C 0.114 3.886 11 H 0.062 0.938 12 O -0.349 6.349 13 C 0.055 3.945 14 C -0.150 4.150 15 C -0.154 4.154 16 C 0.070 3.930 17 H 0.057 0.943 18 O -0.545 6.545 19 H 0.261 0.739 20 H 0.027 0.973 21 H 0.031 0.969 22 H 0.041 0.959 23 H 0.085 0.915 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.948 -7.257 0.409 14.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.546 4.546 8 H 0.092 0.908 9 C -0.041 4.041 10 C 0.056 3.944 11 H 0.080 0.920 12 O -0.267 6.267 13 C -0.022 4.022 14 C -0.187 4.187 15 C -0.192 4.192 16 C 0.010 3.990 17 H 0.075 0.925 18 O -0.348 6.348 19 H 0.071 0.929 20 H 0.045 0.955 21 H 0.049 0.951 22 H 0.059 0.941 23 H 0.104 0.896 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 12.044 -6.965 0.109 13.913 hybrid contribution 1.197 0.548 0.396 1.375 sum 13.241 -6.417 0.505 14.722 Atomic orbital electron populations 1.69915 1.06231 1.26640 1.51863 1.24993 0.94734 0.98998 0.94891 0.86780 0.80163 0.83751 0.78575 1.20258 1.21575 1.19165 1.21079 0.89165 0.94546 1.49766 0.90846 1.19554 0.97465 0.89675 0.97404 1.22207 0.88148 0.97262 0.86733 0.92017 1.88168 1.77699 1.22296 1.38582 1.22485 0.92799 0.85638 1.01296 1.22086 0.98139 1.00137 0.98366 1.22321 1.00493 0.97776 0.98629 1.22711 0.96887 0.89523 0.89847 0.92470 1.86734 1.23454 1.74333 1.50257 0.92906 0.95539 0.95064 0.94065 0.89633 0.91898 0.90786 0.92004 0.91220 0.79360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.03 13.96 55.43 0.77 -28.25 15 2 C 0.06 1.95 5.47 -17.82 -0.10 1.85 15 3 Si 0.88 22.77 27.47 -169.99 -4.67 18.10 15 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 15 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 15 6 H -0.27 -6.60 6.54 56.52 0.37 -6.24 15 7 C -0.51 -15.27 9.43 -34.44 -0.32 -15.60 15 8 H 0.07 2.38 7.99 -52.49 -0.42 1.96 15 9 C 0.00 -0.10 3.51 -27.88 -0.10 -0.20 15 10 C 0.11 2.46 2.37 -26.68 -0.06 2.40 15 11 H 0.06 1.29 8.14 -51.93 -0.42 0.87 15 12 O -0.35 -7.83 10.09 -42.66 -0.43 -8.26 15 13 C 0.06 0.92 6.84 37.20 0.25 1.17 15 14 C -0.15 -2.05 5.98 -26.59 -0.16 -2.21 15 15 C -0.15 -2.05 5.73 -26.54 -0.15 -2.21 15 16 C 0.07 1.18 3.28 -26.59 -0.09 1.09 15 17 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 18 O -0.54 -9.41 12.07 -42.66 -0.52 -9.92 15 19 H 0.26 7.81 8.31 -40.82 -0.34 7.47 15 20 H 0.03 0.66 7.20 -51.93 -0.37 0.29 15 21 H 0.03 0.84 7.21 -51.93 -0.37 0.47 15 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 23 H 0.09 1.28 8.14 -51.93 -0.42 0.86 15 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 25 H 0.07 1.08 7.83 -51.93 -0.41 0.67 15 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 15 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 28 H 0.36 4.24 9.09 45.56 0.41 4.65 15 LS Contribution 231.58 15.07 3.49 3.49 Total: -1.00 -34.18 231.58 -5.36 -39.55 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -3.29 Total: -0.99 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -0.73 Total: -13.70 kcal Atomic # 7 Polarization: -29.03 SS G_CDS: 0.77 Total: -28.25 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.95 Total: -18.19 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.67 Total: 18.10 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -34.18 -5.36 -39.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259657275.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.824 kcal (2) G-P(sol) polarization free energy of solvation -34.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds