Wall clock time and date at job start Mon Mar 30 2020 02:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00082 * 2 1 4 4 H 1.48501 * 109.47245 * 269.99988 * 3 2 1 5 5 H 1.48500 * 109.47112 * 30.00252 * 3 2 1 6 6 H 1.48501 * 109.46968 * 149.99915 * 3 2 1 7 7 C 1.37877 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99962 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00139 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47047 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.48089 * 305.02134 * 10 9 7 12 12 O 1.42900 * 109.48139 * 65.06107 * 10 9 7 13 13 C 1.42901 * 114.09876 * 181.13979 * 12 10 9 14 14 C 1.53090 * 109.41276 * 298.83750 * 13 12 10 15 15 C 1.53177 * 109.16478 * 57.61305 * 14 13 12 16 16 C 1.53095 * 109.47666 * 185.00021 * 10 9 7 17 17 H 1.09002 * 109.52170 * 62.50388 * 16 10 9 18 18 O 1.42901 * 109.52374 * 302.37455 * 16 10 9 19 19 H 0.97001 * 120.00293 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.47048 * 59.99878 * 9 7 2 21 21 H 1.08997 * 109.46988 * 300.00143 * 9 7 2 22 22 H 1.09000 * 109.48210 * 58.82276 * 13 12 10 23 23 H 1.08998 * 109.47982 * 178.85989 * 13 12 10 24 24 H 1.09006 * 109.51905 * 177.51337 * 14 13 12 25 25 H 1.08991 * 109.52645 * 297.63832 * 14 13 12 26 26 H 1.08991 * 109.54667 * 183.15091 * 15 14 13 27 27 H 1.08999 * 109.54635 * 62.87780 * 15 14 13 28 28 H 0.96705 * 114.00049 * 180.12278 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0023 11 1 3.5869 -3.1765 0.8390 12 8 3.6442 -3.2745 -1.2241 13 6 4.0509 -4.6411 -1.3187 14 6 5.5778 -4.7238 -1.2464 15 6 6.0549 -4.0827 0.0605 16 6 5.5472 -2.6388 0.1229 17 1 5.8352 -2.1922 1.0747 18 8 6.1155 -1.8848 -0.9498 19 1 -0.4850 0.8400 -0.0004 20 1 3.8752 -0.6805 0.8888 21 1 3.8745 -0.6801 -0.8911 22 1 3.6167 -5.2074 -0.4947 23 1 3.7088 -5.0574 -2.2661 24 1 5.8877 -5.7685 -1.2739 25 1 6.0119 -4.1927 -2.0934 26 1 7.1443 -4.0879 0.0928 27 1 5.6609 -4.6446 0.9073 28 1 7.0816 -1.8454 -0.9343 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259657275.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:33 Heat of formation + Delta-G solvation = -134.343552 kcal Electronic energy + Delta-G solvation = -11960.618279 eV Core-core repulsion = 9782.117693 eV Total energy + Delta-G solvation = -2178.500585 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.57891 -37.04999 -35.35845 -33.73634 -32.76598 -29.46968 -26.17825 -24.44523 -22.41097 -21.16337 -18.88081 -18.00475 -17.10499 -16.76588 -16.27960 -15.80130 -15.52323 -14.68946 -14.03517 -13.92995 -13.68358 -13.49439 -12.94780 -12.69359 -12.41879 -11.92733 -11.88416 -11.77969 -11.43518 -11.03050 -10.78088 -10.68421 -10.13180 -8.27310 -6.29753 1.34922 1.37835 1.49377 2.37331 2.96361 3.12736 3.52301 3.83103 3.89877 4.02000 4.14508 4.44272 4.52687 4.62154 4.78294 4.80112 4.93030 5.03112 5.07700 5.27638 5.31960 5.46421 5.64669 6.27484 6.59905 6.77786 7.03751 7.32403 8.90131 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.058374 B = 0.012476 C = 0.010947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.549455 B = 2243.818421 C = 2557.105081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.954 3.046 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.245 1.245 7 C -0.520 4.520 8 H 0.028 0.972 9 C 0.001 3.999 10 C 0.108 3.892 11 H 0.056 0.944 12 O -0.395 6.395 13 C 0.043 3.957 14 C -0.142 4.142 15 C -0.147 4.147 16 C 0.075 3.925 17 H 0.073 0.927 18 O -0.570 6.570 19 H 0.266 0.734 20 H 0.038 0.962 21 H 0.017 0.983 22 H 0.047 0.953 23 H 0.094 0.906 24 H 0.096 0.904 25 H 0.065 0.935 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.743 -7.254 0.806 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.195 4.195 3 Si 0.777 3.223 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.168 1.168 7 C -0.558 4.558 8 H 0.046 0.954 9 C -0.036 4.036 10 C 0.050 3.950 11 H 0.074 0.926 12 O -0.314 6.314 13 C -0.034 4.034 14 C -0.180 4.180 15 C -0.185 4.185 16 C 0.016 3.984 17 H 0.091 0.909 18 O -0.377 6.377 19 H 0.075 0.925 20 H 0.056 0.944 21 H 0.035 0.965 22 H 0.066 0.934 23 H 0.112 0.888 24 H 0.115 0.885 25 H 0.084 0.916 26 H 0.116 0.884 27 H 0.098 0.902 28 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 14.873 -6.987 0.514 16.440 hybrid contribution 0.243 0.444 0.226 0.555 sum 15.116 -6.542 0.740 16.488 Atomic orbital electron populations 1.70071 1.08237 1.28057 1.53121 1.26021 0.95705 1.03497 0.94320 0.85610 0.79515 0.78208 0.78975 1.19881 1.20409 1.16829 1.21371 0.91828 0.93002 1.49633 0.95376 1.19441 0.94168 0.93074 0.96932 1.22096 0.91918 0.94516 0.86445 0.92604 1.88067 1.79117 1.25310 1.38955 1.22810 0.95548 0.82954 1.02084 1.22034 0.95250 1.02209 0.98477 1.22297 1.02575 0.94992 0.98602 1.22534 0.93299 0.92248 0.90358 0.90875 1.86660 1.25908 1.74653 1.50492 0.92533 0.94416 0.96467 0.93428 0.88800 0.88524 0.91588 0.88447 0.90167 0.76460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.79 13.96 21.45 0.30 -62.49 15 2 C 0.00 0.03 5.47 84.66 0.46 0.49 15 3 Si 0.95 47.04 27.47 68.60 1.88 48.92 15 4 H -0.27 -13.27 7.11 99.48 0.71 -12.56 15 5 H -0.28 -13.15 7.11 99.48 0.71 -12.44 15 6 H -0.24 -11.11 6.54 99.48 0.65 -10.46 15 7 C -0.52 -32.36 9.43 25.60 0.24 -32.12 15 8 H 0.03 1.93 7.99 -2.91 -0.02 1.91 15 9 C 0.00 0.06 3.51 29.85 0.10 0.16 15 10 C 0.11 4.62 2.37 30.63 0.07 4.69 15 11 H 0.06 2.37 8.14 -2.39 -0.02 2.35 15 12 O -0.40 -17.93 10.09 -141.87 -1.43 -19.37 15 13 C 0.04 1.37 6.84 72.01 0.49 1.86 15 14 C -0.14 -3.45 5.98 30.68 0.18 -3.27 15 15 C -0.15 -3.32 5.73 30.72 0.18 -3.15 15 16 C 0.07 2.32 3.28 30.69 0.10 2.42 15 17 H 0.07 2.02 8.14 -2.39 -0.02 2.00 15 18 O -0.57 -18.20 12.07 -141.87 -1.71 -19.91 15 19 H 0.27 16.22 8.31 -92.71 -0.77 15.45 15 20 H 0.04 1.83 7.20 -2.39 -0.02 1.81 15 21 H 0.02 0.92 7.21 -2.39 -0.02 0.90 15 22 H 0.05 1.44 8.14 -2.39 -0.02 1.42 15 23 H 0.09 2.76 8.14 -2.39 -0.02 2.74 15 24 H 0.10 1.72 8.14 -2.38 -0.02 1.70 15 25 H 0.07 1.73 7.83 -2.39 -0.02 1.71 15 26 H 0.10 1.58 8.14 -2.39 -0.02 1.56 15 27 H 0.08 1.67 8.14 -2.39 -0.02 1.65 15 28 H 0.39 7.68 9.09 -74.05 -0.67 7.00 15 Total: -1.00 -76.27 231.58 1.28 -74.99 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 0.41 Total: 6.76 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: 1.83 Total: -28.91 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: 0.30 Total: -62.49 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -3.14 Total: -39.27 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.88 Total: 48.92 kcal Total: -76.27 1.28 -74.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259657275.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.352 kcal (2) G-P(sol) polarization free energy of solvation -76.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds