Wall clock time and date at job start Mon Mar 30 2020 02:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.48056 * 305.00257 * 10 9 7 12 12 O 1.42904 * 109.47846 * 65.02081 * 10 9 7 13 13 C 1.42908 * 114.09829 * 181.14344 * 12 10 9 14 14 C 1.53098 * 109.41193 * 298.84597 * 13 12 10 15 15 C 1.53172 * 109.16706 * 57.60743 * 14 13 12 16 16 C 1.53086 * 109.48505 * 184.97716 * 10 9 7 17 17 H 1.09003 * 109.52123 * 302.31261 * 16 10 9 18 18 O 1.42899 * 109.52193 * 62.50003 * 16 10 9 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.09008 * 109.48352 * 58.82153 * 13 12 10 23 23 H 1.08995 * 109.48337 * 178.85837 * 13 12 10 24 24 H 1.08998 * 109.52147 * 177.51664 * 14 13 12 25 25 H 1.09002 * 109.51645 * 297.63416 * 14 13 12 26 26 H 1.08997 * 109.54328 * 62.88342 * 15 14 13 27 27 H 1.09000 * 109.54365 * 183.06372 * 15 14 13 28 28 H 0.96708 * 114.00108 * 180.02562 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9294 -3.5554 -0.8412 12 8 2.9872 -3.6546 1.2218 13 6 3.9675 -4.6903 1.3152 14 6 3.2755 -6.0540 1.2430 15 6 2.4807 -6.1461 -0.0631 16 6 1.4840 -4.9845 -0.1247 17 1 0.7706 -5.0731 0.6946 18 8 0.7874 -5.0183 -1.3719 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8897 22 1 4.6743 -4.5973 0.4905 23 1 4.5000 -4.6024 2.2622 24 1 4.0252 -6.8447 1.2697 25 1 2.5992 -6.1645 2.0907 26 1 3.1635 -6.0857 -0.9105 27 1 1.9416 -7.0929 -0.0959 28 1 0.2820 -5.8297 -1.5183 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259657276.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:34 Heat of formation + Delta-G solvation = -113.077751 kcal Electronic energy + Delta-G solvation = -11838.486174 eV Core-core repulsion = 9660.907743 eV Total energy + Delta-G solvation = -2177.578431 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.06969 -35.94837 -33.35387 -32.34391 -30.52872 -27.31710 -24.52774 -22.89904 -20.86446 -19.85131 -17.11257 -16.20124 -15.71893 -15.02365 -14.40223 -14.19643 -13.79556 -13.33915 -12.63582 -12.18144 -12.04803 -11.33995 -11.23905 -10.94246 -10.77585 -10.55572 -10.42229 -10.03203 -9.66623 -9.19129 -9.04136 -8.63215 -8.24421 -5.87521 -3.87404 3.42739 3.45630 3.49390 4.31452 4.56667 4.83679 5.03270 5.06963 5.19485 5.48437 5.51631 5.66125 5.68382 5.91576 6.03187 6.12485 6.20610 6.28290 6.61764 6.90755 7.66744 7.77363 8.00021 8.11382 8.20817 8.54508 9.16616 9.73897 11.24298 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.055495 B = 0.011428 C = 0.009964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.430168 B = 2449.614418 C = 2809.556241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.507 4.507 8 H 0.056 0.944 9 C 0.033 3.967 10 C 0.105 3.895 11 H 0.052 0.948 12 O -0.355 6.355 13 C 0.051 3.949 14 C -0.151 4.151 15 C -0.155 4.155 16 C 0.074 3.926 17 H 0.058 0.942 18 O -0.552 6.552 19 H 0.260 0.740 20 H 0.022 0.978 21 H 0.043 0.957 22 H 0.044 0.956 23 H 0.087 0.913 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.676 -11.724 0.791 12.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.546 4.546 8 H 0.074 0.926 9 C -0.004 4.004 10 C 0.047 3.953 11 H 0.070 0.930 12 O -0.273 6.273 13 C -0.026 4.026 14 C -0.189 4.189 15 C -0.193 4.193 16 C 0.015 3.985 17 H 0.076 0.924 18 O -0.356 6.356 19 H 0.069 0.931 20 H 0.040 0.960 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.105 0.895 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 4.770 -10.862 0.875 11.895 hybrid contribution 0.284 -0.019 -0.074 0.295 sum 5.054 -10.881 0.801 12.024 Atomic orbital electron populations 1.69959 1.05999 1.26522 1.51459 1.24994 0.94841 0.99139 0.95654 0.86638 0.79524 0.83153 0.78538 1.20359 1.21404 1.20282 1.21136 0.93060 0.90704 1.49659 0.92601 1.19154 0.92918 0.90023 0.98279 1.22301 0.93594 0.93617 0.85751 0.93009 1.88186 1.50269 1.49592 1.39293 1.22536 0.91441 0.87189 1.01449 1.22173 0.99995 0.98735 0.98000 1.22379 0.99533 0.99012 0.98383 1.22607 0.93180 0.96520 0.86186 0.92421 1.86625 1.67299 1.43376 1.38287 0.93087 0.96011 0.93917 0.93797 0.89478 0.91408 0.91203 0.91357 0.92073 0.78733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.11 13.29 55.43 0.74 -27.37 15 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 15 3 Si 0.89 22.64 29.54 -169.99 -5.02 17.62 15 4 H -0.28 -6.89 7.11 56.52 0.40 -6.48 15 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 15 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 15 7 C -0.51 -15.21 8.88 -34.44 -0.31 -15.52 15 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 15 9 C 0.03 0.92 4.62 -27.88 -0.13 0.79 15 10 C 0.10 2.38 2.31 -26.69 -0.06 2.32 15 11 H 0.05 1.20 8.14 -51.93 -0.42 0.78 15 12 O -0.35 -7.79 10.16 -35.23 -0.36 -8.15 15 13 C 0.05 0.83 6.84 37.21 0.25 1.08 15 14 C -0.15 -2.04 6.14 -26.59 -0.16 -2.20 15 15 C -0.16 -2.21 5.66 -26.55 -0.15 -2.36 15 16 C 0.07 1.36 3.08 -26.59 -0.08 1.28 15 17 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 18 O -0.55 -9.96 12.68 -35.23 -0.45 -10.41 15 19 H 0.26 7.64 8.31 -40.82 -0.34 7.30 15 20 H 0.02 0.64 8.14 -51.93 -0.42 0.22 15 21 H 0.04 1.26 7.62 -51.93 -0.40 0.86 15 22 H 0.04 0.67 8.14 -51.92 -0.42 0.25 15 23 H 0.09 1.21 8.14 -51.93 -0.42 0.79 15 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 25 H 0.07 0.94 8.14 -51.93 -0.42 0.51 15 26 H 0.07 0.98 8.14 -51.93 -0.42 0.55 15 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 28 H 0.37 4.52 9.09 45.56 0.41 4.93 15 LS Contribution 236.00 15.07 3.56 3.56 Total: -1.00 -33.32 236.00 -5.59 -38.91 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -3.33 Total: -1.07 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -0.73 Total: -13.09 kcal Atomic # 7 Polarization: -28.11 SS G_CDS: 0.74 Total: -27.37 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.80 Total: -18.56 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -33.32 -5.59 -38.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259657276.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.166 kcal (2) G-P(sol) polarization free energy of solvation -33.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds