Wall clock time and date at job start Mon Mar 30 2020 02:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.48056 * 305.00257 * 10 9 7 12 12 O 1.42904 * 109.47846 * 65.02081 * 10 9 7 13 13 C 1.42908 * 114.09829 * 181.14344 * 12 10 9 14 14 C 1.53098 * 109.41193 * 298.84597 * 13 12 10 15 15 C 1.53172 * 109.16706 * 57.60743 * 14 13 12 16 16 C 1.53086 * 109.48505 * 184.97716 * 10 9 7 17 17 H 1.09003 * 109.52123 * 302.31261 * 16 10 9 18 18 O 1.42899 * 109.52193 * 62.50003 * 16 10 9 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.09008 * 109.48352 * 58.82153 * 13 12 10 23 23 H 1.08995 * 109.48337 * 178.85837 * 13 12 10 24 24 H 1.08998 * 109.52147 * 177.51664 * 14 13 12 25 25 H 1.09002 * 109.51645 * 297.63416 * 14 13 12 26 26 H 1.08997 * 109.54328 * 62.88342 * 15 14 13 27 27 H 1.09000 * 109.54365 * 183.06372 * 15 14 13 28 28 H 0.96708 * 114.00108 * 180.02562 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9294 -3.5554 -0.8412 12 8 2.9872 -3.6546 1.2218 13 6 3.9675 -4.6903 1.3152 14 6 3.2755 -6.0540 1.2430 15 6 2.4807 -6.1461 -0.0631 16 6 1.4840 -4.9845 -0.1247 17 1 0.7706 -5.0731 0.6946 18 8 0.7874 -5.0183 -1.3719 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8897 22 1 4.6743 -4.5973 0.4905 23 1 4.5000 -4.6024 2.2622 24 1 4.0252 -6.8447 1.2697 25 1 2.5992 -6.1645 2.0907 26 1 3.1635 -6.0857 -0.9105 27 1 1.9416 -7.0929 -0.0959 28 1 0.2820 -5.8297 -1.5183 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259657276.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:34 Heat of formation + Delta-G solvation = -138.993938 kcal Electronic energy + Delta-G solvation = -11839.609985 eV Core-core repulsion = 9660.907743 eV Total energy + Delta-G solvation = -2178.702241 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.55245 -37.39765 -35.40638 -33.82951 -32.39512 -29.07770 -26.29552 -24.45969 -22.61553 -21.29238 -18.53612 -18.45801 -17.19631 -16.73839 -16.25088 -15.60453 -15.34617 -14.56145 -14.12234 -14.00689 -13.72907 -13.44795 -12.79184 -12.63572 -12.54624 -12.22644 -12.00205 -11.63133 -11.42705 -11.21817 -10.69596 -10.56288 -10.22326 -8.18059 -6.27936 1.38747 1.43648 1.51431 2.42571 2.86395 3.15087 3.51202 3.81189 3.85264 3.97436 4.16404 4.28855 4.51090 4.66253 4.85007 4.88741 4.94122 4.99218 5.09633 5.29554 5.44932 5.56181 5.79171 6.21647 6.51937 6.82703 6.96233 7.38815 8.94163 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.055495 B = 0.011428 C = 0.009964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.430168 B = 2449.614418 C = 2809.556241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.533 4.533 8 H 0.054 0.946 9 C 0.038 3.962 10 C 0.111 3.889 11 H 0.040 0.960 12 O -0.389 6.389 13 C 0.038 3.962 14 C -0.145 4.145 15 C -0.145 4.145 16 C 0.078 3.922 17 H 0.051 0.949 18 O -0.575 6.575 19 H 0.264 0.736 20 H -0.010 1.010 21 H 0.013 0.987 22 H 0.050 0.950 23 H 0.109 0.891 24 H 0.106 0.894 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.096 0.904 28 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.103 -12.721 0.982 14.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.571 4.571 8 H 0.072 0.928 9 C 0.002 3.998 10 C 0.053 3.947 11 H 0.058 0.942 12 O -0.309 6.309 13 C -0.038 4.038 14 C -0.182 4.182 15 C -0.183 4.183 16 C 0.019 3.981 17 H 0.069 0.931 18 O -0.383 6.383 19 H 0.073 0.927 20 H 0.008 0.992 21 H 0.032 0.968 22 H 0.068 0.932 23 H 0.127 0.873 24 H 0.124 0.876 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.114 0.886 28 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 6.199 -11.896 1.063 13.457 hybrid contribution -0.171 0.260 -0.122 0.334 sum 6.028 -11.637 0.940 13.139 Atomic orbital electron populations 1.70097 1.07774 1.27829 1.51900 1.25998 0.95856 1.03399 0.94795 0.85454 0.78269 0.77884 0.79134 1.19095 1.20407 1.19335 1.21502 0.93217 0.92171 1.50183 0.92756 1.18934 0.93449 0.92201 0.95264 1.21892 0.92784 0.94148 0.85870 0.94249 1.88087 1.51741 1.52583 1.38475 1.22928 0.90639 0.87347 1.02869 1.22158 1.00649 0.97913 0.97522 1.22307 0.98687 0.98319 0.98946 1.22401 0.93751 0.95881 0.86054 0.93137 1.86558 1.68012 1.45695 1.38081 0.92728 0.99169 0.96837 0.93210 0.87339 0.87559 0.91056 0.91159 0.88563 0.75794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.90 13.29 21.45 0.28 -59.62 15 2 C 0.00 -0.21 5.46 84.66 0.46 0.26 15 3 Si 0.97 46.78 29.54 68.60 2.03 48.81 15 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 15 5 H -0.28 -12.95 7.11 99.48 0.71 -12.25 15 6 H -0.27 -12.51 7.11 99.48 0.71 -11.80 15 7 C -0.53 -32.92 8.88 25.60 0.23 -32.69 15 8 H 0.05 3.28 7.74 -2.91 -0.02 3.26 15 9 C 0.04 2.24 4.62 29.85 0.14 2.38 15 10 C 0.11 5.14 2.31 30.62 0.07 5.21 15 11 H 0.04 1.88 8.14 -2.38 -0.02 1.86 15 12 O -0.39 -17.18 10.16 -148.98 -1.51 -18.69 15 13 C 0.04 1.16 6.84 72.02 0.49 1.65 15 14 C -0.14 -3.39 6.14 30.68 0.19 -3.20 15 15 C -0.14 -3.68 5.66 30.71 0.17 -3.51 15 16 C 0.08 2.83 3.08 30.68 0.09 2.92 15 17 H 0.05 1.87 8.14 -2.39 -0.02 1.85 15 18 O -0.58 -20.58 12.68 -148.98 -1.89 -22.47 15 19 H 0.26 15.78 8.31 -92.71 -0.77 15.01 15 20 H -0.01 -0.64 8.14 -2.39 -0.02 -0.65 15 21 H 0.01 0.84 7.62 -2.39 -0.02 0.82 15 22 H 0.05 1.43 8.14 -2.38 -0.02 1.41 15 23 H 0.11 2.76 8.14 -2.39 -0.02 2.74 15 24 H 0.11 1.75 8.14 -2.39 -0.02 1.73 15 25 H 0.07 1.68 8.14 -2.39 -0.02 1.66 15 26 H 0.07 1.79 8.14 -2.39 -0.02 1.77 15 27 H 0.10 1.82 8.14 -2.39 -0.02 1.80 15 28 H 0.39 9.08 9.09 -74.05 -0.67 8.41 15 Total: -1.00 -74.12 236.00 1.22 -72.90 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 0.46 Total: 6.06 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: 1.85 Total: -26.99 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: 0.28 Total: -59.62 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -3.40 Total: -41.16 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -74.12 1.22 -72.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259657276.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.093 kcal (2) G-P(sol) polarization free energy of solvation -74.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds