Wall clock time and date at job start Mon Mar 30 2020 02:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00256 * 2 1 4 4 H 1.48505 * 109.47021 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47515 * 300.00203 * 3 2 1 6 6 H 1.48503 * 109.47041 * 60.00456 * 3 2 1 7 7 C 1.37878 * 119.99188 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99203 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00525 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47262 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.48305 * 55.02011 * 10 9 7 12 12 O 1.42905 * 109.47837 * 294.99919 * 10 9 7 13 13 C 1.42902 * 114.09897 * 178.86199 * 12 10 9 14 14 C 1.53089 * 109.41513 * 61.15433 * 13 12 10 15 15 C 1.53177 * 109.16584 * 302.39390 * 14 13 12 16 16 C 1.53100 * 109.48236 * 174.97091 * 10 9 7 17 17 H 1.08997 * 109.45514 * 57.63555 * 16 10 9 18 18 O 1.42908 * 109.59674 * 297.44661 * 16 10 9 19 19 H 0.97010 * 119.99448 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47236 * 60.00259 * 9 7 2 21 21 H 1.08995 * 109.46957 * 300.00256 * 9 7 2 22 22 H 1.09006 * 109.47676 * 301.17676 * 13 12 10 23 23 H 1.08996 * 109.47921 * 181.14393 * 13 12 10 24 24 H 1.08999 * 109.52464 * 182.48953 * 14 13 12 25 25 H 1.09000 * 109.52446 * 62.30398 * 14 13 12 26 26 H 1.09002 * 109.54459 * 176.84823 * 15 14 13 27 27 H 1.08999 * 109.54390 * 297.02744 * 15 14 13 28 28 H 0.96698 * 113.99989 * 180.27862 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 1 2.9290 -3.5558 0.8414 12 8 2.9874 -3.6545 -1.2216 13 6 3.9676 -4.6901 -1.3150 14 6 3.2756 -6.0538 -1.2434 15 6 2.4804 -6.1462 0.0625 16 6 1.4839 -4.9846 0.1260 17 1 0.7696 -5.0721 -0.6927 18 8 0.7884 -5.0198 1.3739 19 1 -0.4850 0.8402 0.0004 20 1 0.6238 -2.5567 -0.8903 21 1 0.6245 -2.5570 0.8896 22 1 4.6742 -4.5973 -0.4902 23 1 4.5003 -4.6020 -2.2619 24 1 4.0252 -6.8446 -1.2701 25 1 2.5987 -6.1637 -2.0907 26 1 1.9400 -7.0923 0.0942 27 1 3.1631 -6.0876 0.9101 28 1 0.2873 -5.8334 1.5221 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259657277.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:35 Heat of formation + Delta-G solvation = -139.122410 kcal Electronic energy + Delta-G solvation = -11839.436410 eV Core-core repulsion = 9660.728597 eV Total energy + Delta-G solvation = -2178.707812 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.55155 -37.39898 -35.40967 -33.82920 -32.39796 -29.08033 -26.29921 -24.46258 -22.61858 -21.29142 -18.53497 -18.46535 -17.19827 -16.73869 -16.24914 -15.60438 -15.34839 -14.56468 -14.14073 -14.00789 -13.72273 -13.45347 -12.79593 -12.63602 -12.55849 -12.22657 -11.99816 -11.63211 -11.40787 -11.21094 -10.69759 -10.57480 -10.22342 -8.18666 -6.28318 1.38700 1.40423 1.54069 2.42264 2.86231 3.14676 3.50990 3.81173 3.85141 3.97365 4.16478 4.28870 4.51123 4.66189 4.84941 4.88758 4.94123 4.99132 5.09572 5.29536 5.45056 5.56024 5.79180 6.21451 6.51861 6.82804 6.96228 7.38598 8.93998 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.055478 B = 0.011427 C = 0.009963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.584371 B = 2449.809138 C = 2809.811154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.054 0.946 9 C 0.038 3.962 10 C 0.111 3.889 11 H 0.039 0.961 12 O -0.389 6.389 13 C 0.038 3.962 14 C -0.145 4.145 15 C -0.145 4.145 16 C 0.078 3.922 17 H 0.051 0.949 18 O -0.575 6.575 19 H 0.264 0.736 20 H -0.010 1.010 21 H 0.014 0.986 22 H 0.049 0.951 23 H 0.109 0.891 24 H 0.106 0.894 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.106 -12.743 -0.989 14.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.568 4.568 8 H 0.072 0.928 9 C 0.001 3.999 10 C 0.053 3.947 11 H 0.057 0.943 12 O -0.309 6.309 13 C -0.038 4.038 14 C -0.182 4.182 15 C -0.183 4.183 16 C 0.019 3.981 17 H 0.069 0.931 18 O -0.383 6.383 19 H 0.073 0.927 20 H 0.009 0.991 21 H 0.032 0.968 22 H 0.068 0.932 23 H 0.127 0.873 24 H 0.125 0.875 25 H 0.089 0.911 26 H 0.114 0.886 27 H 0.088 0.912 28 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 6.207 -11.921 -1.072 13.483 hybrid contribution -0.188 0.267 0.126 0.350 sum 6.020 -11.654 -0.946 13.151 Atomic orbital electron populations 1.70116 1.07771 1.27692 1.52073 1.26001 0.95859 1.03415 0.94830 0.85339 0.78882 0.78499 0.77946 1.18860 1.20124 1.20004 1.21558 0.93217 0.92156 1.49914 0.92772 1.18943 0.93460 0.92222 0.95285 1.21891 0.92783 0.94149 0.85877 0.94271 1.88086 1.51726 1.52566 1.38489 1.22926 0.90639 0.87351 1.02870 1.22157 1.00637 0.97910 0.97524 1.22309 0.98686 0.98314 0.98961 1.22398 0.93767 0.95886 0.86038 0.93148 1.86556 1.68309 1.45434 1.38045 0.92738 0.99142 0.96820 0.93229 0.87326 0.87546 0.91050 0.88570 0.91150 0.75787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.90 13.29 21.45 0.28 -59.62 15 2 C 0.00 -0.25 5.46 84.65 0.46 0.21 15 3 Si 0.97 46.85 29.54 68.60 2.03 48.87 15 4 H -0.26 -12.30 7.11 99.48 0.71 -11.59 15 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 15 6 H -0.27 -12.73 7.11 99.48 0.71 -12.03 15 7 C -0.53 -32.79 8.88 25.60 0.23 -32.56 15 8 H 0.05 3.29 7.74 -2.91 -0.02 3.26 15 9 C 0.04 2.20 4.63 29.85 0.14 2.34 15 10 C 0.11 5.13 2.31 30.63 0.07 5.20 15 11 H 0.04 1.87 8.14 -2.39 -0.02 1.85 15 12 O -0.39 -17.17 10.16 -148.98 -1.51 -18.68 15 13 C 0.04 1.16 6.84 72.01 0.49 1.65 15 14 C -0.14 -3.39 6.14 30.68 0.19 -3.20 15 15 C -0.15 -3.68 5.65 30.71 0.17 -3.51 15 16 C 0.08 2.83 3.08 30.69 0.09 2.92 15 17 H 0.05 1.87 8.14 -2.39 -0.02 1.85 15 18 O -0.58 -20.56 12.69 -148.98 -1.89 -22.45 15 19 H 0.26 15.69 8.31 -92.70 -0.77 14.92 15 20 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 15 21 H 0.01 0.85 7.62 -2.39 -0.02 0.83 15 22 H 0.05 1.43 8.14 -2.38 -0.02 1.41 15 23 H 0.11 2.77 8.14 -2.39 -0.02 2.75 15 24 H 0.11 1.75 8.14 -2.39 -0.02 1.73 15 25 H 0.07 1.68 8.14 -2.39 -0.02 1.66 15 26 H 0.10 1.82 8.14 -2.39 -0.02 1.80 15 27 H 0.07 1.79 8.14 -2.39 -0.02 1.77 15 28 H 0.39 9.07 9.08 -74.06 -0.67 8.40 15 Total: -1.00 -74.21 236.01 1.22 -72.99 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 0.46 Total: 5.82 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 1.85 Total: -26.94 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: 0.28 Total: -59.62 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -3.40 Total: -41.14 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.87 kcal Total: -74.21 1.22 -72.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259657277.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.129 kcal (2) G-P(sol) polarization free energy of solvation -74.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds