Wall clock time and date at job start Mon Mar 30 2020 02:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00149 * 2 1 4 4 H 1.48499 * 109.46929 * 239.99965 * 3 2 1 5 5 H 1.48496 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46983 * 119.99872 * 3 2 1 7 7 C 1.37877 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00388 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00360 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47623 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.48715 * 54.96810 * 10 9 7 12 12 O 1.42909 * 109.47913 * 294.94400 * 10 9 7 13 13 C 1.42898 * 114.09863 * 178.85621 * 12 10 9 14 14 C 1.53092 * 109.41356 * 61.15722 * 13 12 10 15 15 C 1.53185 * 109.16635 * 302.39152 * 14 13 12 16 16 C 1.53084 * 109.48310 * 174.99926 * 10 9 7 17 17 H 1.08998 * 109.57463 * 297.53129 * 16 10 9 18 18 O 1.42903 * 109.52312 * 57.68845 * 16 10 9 19 19 H 0.96994 * 119.99922 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46638 * 59.99712 * 9 7 2 21 21 H 1.09000 * 109.47178 * 300.00489 * 9 7 2 22 22 H 1.09003 * 109.48490 * 301.17999 * 13 12 10 23 23 H 1.08997 * 109.49241 * 181.14443 * 13 12 10 24 24 H 1.09000 * 109.52568 * 182.48582 * 14 13 12 25 25 H 1.08996 * 109.52311 * 62.29899 * 14 13 12 26 26 H 1.09000 * 109.53857 * 297.11614 * 15 14 13 27 27 H 1.08995 * 109.54402 * 176.84390 * 15 14 13 28 28 H 0.96700 * 114.00311 * 179.68667 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6622 0.0027 11 1 2.9298 -3.5545 0.8440 12 8 2.9867 -3.6563 -1.2189 13 6 3.9670 -4.6919 -1.3114 14 6 3.2751 -6.0555 -1.2372 15 6 2.4808 -6.1460 0.0695 16 6 1.4842 -4.9843 0.1297 17 1 0.9523 -5.0097 1.0808 18 8 0.5485 -5.1018 -0.9440 19 1 -0.4850 0.8400 -0.0004 20 1 0.6240 -2.5575 -0.8880 21 1 0.6247 -2.5564 0.8919 22 1 4.6741 -4.5979 -0.4872 23 1 4.4991 -4.6054 -2.2587 24 1 4.0248 -6.8464 -1.2632 25 1 2.5976 -6.1668 -2.0838 26 1 3.1641 -6.0845 0.9165 27 1 1.9405 -7.0921 0.1030 28 1 0.0334 -5.9201 -0.9291 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259657278.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:37 Heat of formation + Delta-G solvation = -110.938708 kcal Electronic energy + Delta-G solvation = -11918.529246 eV Core-core repulsion = 9741.043571 eV Total energy + Delta-G solvation = -2177.485675 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.07834 -35.56912 -33.32005 -32.22166 -30.64855 -27.34210 -24.50311 -22.99871 -20.86596 -19.66584 -16.59889 -16.19721 -15.65688 -15.09379 -14.54794 -14.37198 -14.01469 -12.70253 -12.40218 -12.29546 -11.72643 -11.62714 -11.20443 -10.99620 -10.75302 -10.54053 -10.37910 -9.98075 -9.46467 -9.15407 -9.05528 -8.54572 -8.24245 -5.87542 -3.87732 3.41973 3.45493 3.49181 4.50048 4.56494 4.87803 5.07185 5.12574 5.22708 5.49121 5.51881 5.70441 5.85007 5.96168 5.99249 6.21960 6.22908 6.33630 6.50333 6.92375 7.62559 7.85844 8.11063 8.13588 8.27524 8.55977 9.17077 9.73718 11.24128 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.062951 B = 0.011263 C = 0.010101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.684538 B = 2485.501182 C = 2771.405877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.509 4.509 8 H 0.055 0.945 9 C 0.033 3.967 10 C 0.105 3.895 11 H 0.055 0.945 12 O -0.351 6.351 13 C 0.055 3.945 14 C -0.149 4.149 15 C -0.155 4.155 16 C 0.073 3.927 17 H 0.057 0.943 18 O -0.541 6.541 19 H 0.259 0.741 20 H 0.036 0.964 21 H 0.027 0.973 22 H 0.039 0.961 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.741 -11.627 0.414 12.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.547 4.547 8 H 0.074 0.926 9 C -0.004 4.004 10 C 0.047 3.953 11 H 0.073 0.927 12 O -0.269 6.269 13 C -0.023 4.023 14 C -0.187 4.187 15 C -0.193 4.193 16 C 0.013 3.987 17 H 0.075 0.925 18 O -0.344 6.344 19 H 0.069 0.931 20 H 0.054 0.946 21 H 0.046 0.954 22 H 0.057 0.943 23 H 0.102 0.898 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 4.810 -10.768 0.112 11.794 hybrid contribution 0.323 0.005 0.430 0.538 sum 5.133 -10.763 0.542 11.937 Atomic orbital electron populations 1.69962 1.05993 1.26511 1.51388 1.24996 0.94830 0.99125 0.95653 0.86647 0.79532 0.83200 0.78534 1.20256 1.21406 1.20397 1.21156 0.93040 0.90781 1.49724 0.92632 1.19076 0.93004 0.89891 0.98397 1.22479 0.92901 0.93811 0.86068 0.92676 1.88168 1.50353 1.49392 1.39029 1.22468 0.91261 0.87538 1.01004 1.22078 0.99769 0.98349 0.98484 1.22342 0.99491 0.99016 0.98453 1.22662 0.89662 0.96450 0.89911 0.92544 1.86765 1.54226 1.43424 1.50024 0.93090 0.94550 0.95443 0.94301 0.89834 0.92045 0.90777 0.91399 0.92084 0.79551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.29 55.43 0.74 -27.32 15 2 C 0.05 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.89 22.57 29.54 -169.99 -5.02 17.55 15 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 15 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 7 C -0.51 -15.18 8.88 -34.44 -0.31 -15.48 15 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 15 9 C 0.03 0.91 4.44 -27.88 -0.12 0.79 15 10 C 0.11 2.35 2.37 -26.69 -0.06 2.29 15 11 H 0.06 1.19 8.14 -51.93 -0.42 0.76 15 12 O -0.35 -8.01 10.09 -42.72 -0.43 -8.45 15 13 C 0.06 0.93 6.84 37.20 0.25 1.18 15 14 C -0.15 -2.13 5.98 -26.59 -0.16 -2.29 15 15 C -0.16 -2.18 5.73 -26.54 -0.15 -2.33 15 16 C 0.07 1.30 3.28 -26.60 -0.09 1.22 15 17 H 0.06 0.96 8.14 -51.93 -0.42 0.53 15 18 O -0.54 -10.11 12.07 -42.72 -0.52 -10.63 15 19 H 0.26 7.64 8.31 -40.82 -0.34 7.30 15 20 H 0.04 1.11 7.79 -51.93 -0.40 0.71 15 21 H 0.03 0.78 8.14 -51.93 -0.42 0.35 15 22 H 0.04 0.61 8.14 -51.93 -0.42 0.18 15 23 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 25 H 0.07 1.13 7.83 -51.93 -0.41 0.72 15 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 28 H 0.36 4.70 9.08 45.56 0.41 5.11 15 LS Contribution 235.17 15.07 3.54 3.54 Total: -1.00 -33.62 235.17 -5.74 -39.36 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -3.32 Total: -0.96 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -0.73 Total: -13.10 kcal Atomic # 7 Polarization: -28.06 SS G_CDS: 0.74 Total: -27.32 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.95 Total: -19.08 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -33.62 -5.74 -39.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259657278.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.578 kcal (2) G-P(sol) polarization free energy of solvation -33.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds