Wall clock time and date at job start Mon Mar 30 2020 02:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00149 * 2 1 4 4 H 1.48499 * 109.46929 * 239.99965 * 3 2 1 5 5 H 1.48496 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46983 * 119.99872 * 3 2 1 7 7 C 1.37877 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00388 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00360 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47623 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.48715 * 54.96810 * 10 9 7 12 12 O 1.42909 * 109.47913 * 294.94400 * 10 9 7 13 13 C 1.42898 * 114.09863 * 178.85621 * 12 10 9 14 14 C 1.53092 * 109.41356 * 61.15722 * 13 12 10 15 15 C 1.53185 * 109.16635 * 302.39152 * 14 13 12 16 16 C 1.53084 * 109.48310 * 174.99926 * 10 9 7 17 17 H 1.08998 * 109.57463 * 297.53129 * 16 10 9 18 18 O 1.42903 * 109.52312 * 57.68845 * 16 10 9 19 19 H 0.96994 * 119.99922 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46638 * 59.99712 * 9 7 2 21 21 H 1.09000 * 109.47178 * 300.00489 * 9 7 2 22 22 H 1.09003 * 109.48490 * 301.17999 * 13 12 10 23 23 H 1.08997 * 109.49241 * 181.14443 * 13 12 10 24 24 H 1.09000 * 109.52568 * 182.48582 * 14 13 12 25 25 H 1.08996 * 109.52311 * 62.29899 * 14 13 12 26 26 H 1.09000 * 109.53857 * 297.11614 * 15 14 13 27 27 H 1.08995 * 109.54402 * 176.84390 * 15 14 13 28 28 H 0.96700 * 114.00311 * 179.68667 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6622 0.0027 11 1 2.9298 -3.5545 0.8440 12 8 2.9867 -3.6563 -1.2189 13 6 3.9670 -4.6919 -1.3114 14 6 3.2751 -6.0555 -1.2372 15 6 2.4808 -6.1460 0.0695 16 6 1.4842 -4.9843 0.1297 17 1 0.9523 -5.0097 1.0808 18 8 0.5485 -5.1018 -0.9440 19 1 -0.4850 0.8400 -0.0004 20 1 0.6240 -2.5575 -0.8880 21 1 0.6247 -2.5564 0.8919 22 1 4.6741 -4.5979 -0.4872 23 1 4.4991 -4.6054 -2.2587 24 1 4.0248 -6.8464 -1.2632 25 1 2.5976 -6.1668 -2.0838 26 1 3.1641 -6.0845 0.9165 27 1 1.9405 -7.0921 0.1030 28 1 0.0334 -5.9201 -0.9291 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259657278.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:36 Heat of formation + Delta-G solvation = -136.733380 kcal Electronic energy + Delta-G solvation = -11919.647787 eV Core-core repulsion = 9741.043571 eV Total energy + Delta-G solvation = -2178.604216 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.54878 -37.04618 -35.39517 -33.67913 -32.48984 -29.12149 -26.25419 -24.55311 -22.62312 -21.11780 -18.44373 -18.00326 -17.10348 -16.77951 -16.29478 -15.84618 -15.51367 -14.37704 -13.96742 -13.90200 -13.46663 -13.32364 -12.87250 -12.67771 -12.50846 -12.35787 -11.92652 -11.66434 -11.35231 -10.94348 -10.70449 -10.53649 -10.11087 -8.17031 -6.26919 1.38856 1.43877 1.51508 2.43005 3.01691 3.18124 3.53900 3.85807 3.92375 4.03319 4.17623 4.46288 4.57881 4.64966 4.78639 4.88183 4.93342 5.03994 5.19948 5.34470 5.42390 5.61796 5.83368 6.22848 6.65350 6.86541 7.03822 7.40044 8.95033 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.062951 B = 0.011263 C = 0.010101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.684538 B = 2485.501182 C = 2771.405877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.532 4.532 8 H 0.055 0.945 9 C 0.040 3.960 10 C 0.106 3.894 11 H 0.060 0.940 12 O -0.394 6.394 13 C 0.042 3.958 14 C -0.143 4.143 15 C -0.145 4.145 16 C 0.073 3.927 17 H 0.063 0.937 18 O -0.571 6.571 19 H 0.263 0.737 20 H -0.008 1.008 21 H 0.008 0.992 22 H 0.053 0.947 23 H 0.097 0.903 24 H 0.099 0.901 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.257 -12.620 0.752 14.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.570 4.570 8 H 0.073 0.927 9 C 0.003 3.997 10 C 0.049 3.951 11 H 0.078 0.922 12 O -0.313 6.313 13 C -0.034 4.034 14 C -0.181 4.181 15 C -0.183 4.183 16 C 0.014 3.986 17 H 0.081 0.919 18 O -0.378 6.378 19 H 0.072 0.928 20 H 0.011 0.989 21 H 0.026 0.974 22 H 0.071 0.929 23 H 0.115 0.885 24 H 0.117 0.883 25 H 0.080 0.920 26 H 0.101 0.899 27 H 0.112 0.888 28 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 6.331 -11.797 0.456 13.397 hybrid contribution -0.162 0.284 0.282 0.432 sum 6.169 -11.513 0.738 13.082 Atomic orbital electron populations 1.70103 1.07789 1.27760 1.51993 1.25997 0.95825 1.03391 0.94883 0.85468 0.78259 0.77970 0.79126 1.19712 1.20540 1.18726 1.21542 0.93252 0.92230 1.50001 0.92663 1.18854 0.93501 0.92118 0.95250 1.22206 0.92428 0.94154 0.86346 0.92205 1.88063 1.51918 1.52305 1.39020 1.22826 0.90588 0.87665 1.02327 1.22045 1.00271 0.97591 0.98161 1.22291 0.98801 0.98342 0.98866 1.22550 0.90372 0.95803 0.89882 0.91918 1.86699 1.55056 1.45570 1.50440 0.92798 0.98934 0.97397 0.92922 0.88527 0.88300 0.91972 0.89903 0.88786 0.76798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.89 13.29 21.45 0.28 -59.61 15 2 C 0.00 -0.24 5.46 84.65 0.46 0.22 15 3 Si 0.97 46.63 29.54 68.60 2.03 48.66 15 4 H -0.27 -12.80 7.11 99.48 0.71 -12.10 15 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 15 6 H -0.26 -11.93 7.11 99.48 0.71 -11.22 15 7 C -0.53 -32.58 8.88 25.60 0.23 -32.35 15 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 15 9 C 0.04 2.29 4.44 29.85 0.13 2.42 15 10 C 0.11 4.80 2.37 30.62 0.07 4.87 15 11 H 0.06 2.58 8.14 -2.39 -0.02 2.56 15 12 O -0.39 -18.04 10.09 -141.82 -1.43 -19.47 15 13 C 0.04 1.35 6.84 72.01 0.49 1.84 15 14 C -0.14 -3.62 5.98 30.69 0.18 -3.44 15 15 C -0.15 -3.58 5.73 30.72 0.18 -3.40 15 16 C 0.07 2.55 3.28 30.68 0.10 2.65 15 17 H 0.06 2.07 8.14 -2.39 -0.02 2.05 15 18 O -0.57 -21.19 12.07 -141.82 -1.71 -22.90 15 19 H 0.26 15.76 8.31 -92.71 -0.77 14.99 15 20 H -0.01 -0.51 7.79 -2.38 -0.02 -0.53 15 21 H 0.01 0.47 8.14 -2.39 -0.02 0.45 15 22 H 0.05 1.51 8.14 -2.39 -0.02 1.49 15 23 H 0.10 2.74 8.14 -2.39 -0.02 2.73 15 24 H 0.10 1.81 8.14 -2.39 -0.02 1.79 15 25 H 0.06 1.74 7.83 -2.39 -0.02 1.72 15 26 H 0.08 1.83 8.14 -2.39 -0.02 1.81 15 27 H 0.09 1.75 8.14 -2.39 -0.02 1.73 15 28 H 0.38 9.53 9.08 -74.06 -0.67 8.86 15 Total: -1.00 -74.71 235.17 1.48 -73.23 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 0.46 Total: 7.27 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: 1.85 Total: -27.19 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: 0.28 Total: -59.61 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -3.14 Total: -42.37 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -74.71 1.48 -73.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259657278.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.500 kcal (2) G-P(sol) polarization free energy of solvation -74.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds